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Mutant Information

Mutant Name	704-2 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 704-2 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7784021	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g13890
SBS	Chr1	7784022	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g13890
SBS	Chr12	6629708	C-A	HET	INTERGENIC
SBS	Chr2	9257430	C-T	Homo	INTERGENIC
SBS	Chr4	26375489	G-A	Homo	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	337838	337842	4
Deletion	Chr11	3922120	3922122	2
Deletion	Chr1	7746347	7746351	4	LOC_Os01g13810
Deletion	Chr1	7780438	7780440	2	LOC_Os01g13880
Deletion	Chr1	9312314	9312315	1
Deletion	Chr9	11957774	11957792	18
Deletion	Chr2	12557084	12557093	9
Deletion	Chr2	12691001	12703000	12000	2
Deletion	Chr10	14042971	14042990	19
Deletion	Chr5	23630583	23630584	1
Deletion	Chr8	27581865	27581872	7
Deletion	Chr2	29041001	29053000	12000	2
Deletion	Chr1	39510537	39510547	10

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	12180697	12180697	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	9270978	Chr2	12702806	2
Translocation	Chr9	10822846	Chr4	9875152
Translocation	Chr6	22061622	Chr2	12690396