Search Nipponbare

Mutant Information

Mutant Name	704-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 704-3 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7784021	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13890
SBS	Chr1	7784022	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13890
SBS	Chr4	10130908	A-C	Homo	INTERGENIC
SBS	Chr6	21798032	C-T	Homo	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	6525037	6525038	1
Deletion	Chr1	7746347	7746351	4	LOC_Os01g13810
Deletion	Chr1	7780438	7780440	2	LOC_Os01g13880
Deletion	Chr1	9312314	9312315	1
Deletion	Chr3	9565323	9565327	4
Deletion	Chr12	9793021	9793023	2
Deletion	Chr9	11957774	11957792	18
Deletion	Chr10	14042971	14042990	19
Deletion	Chr11	22507113	22507115	2	LOC_Os11g37960
Deletion	Chr5	23630583	23630584	1
Deletion	Chr8	27581865	27581872	7
Deletion	Chr1	35417560	35417561	1	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	23208034	23208036	3
Insertion	Chr5	311092	311093	2	LOC_Os05g01520
Insertion	Chr7	21375654	21375654	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10822846	Chr4	9875152
Translocation	Chr6	22061643	Chr2	12690420