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Mutant Information

Mutant Name	704-4-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 704-4-3 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 6

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	12664659	C-T	Homo	INTERGENIC
SBS	Chr11	14894290	G-A	Homo	INTERGENIC
SBS	Chr11	14894291	G-A	Homo	INTERGENIC
SBS	Chr12	6629708	C-A	Homo	INTERGENIC
SBS	Chr7	9889321	A-T	Homo	INTERGENIC
SBS	Chr9	19960056	G-A	Homo	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	4714896	4714908	12
Deletion	Chr9	5281833	5281869	36	LOC_Os09g09760
Deletion	Chr11	8925001	9057000	132000	17
Deletion	Chr8	10873325	10873326	1
Deletion	Chr1	11607856	11607859	3
Deletion	Chr12	22066178	22066181	3
Deletion	Chr8	22201140	22201141	1
Deletion	Chr2	23584002	23584492	490
Deletion	Chr7	23752211	23752212	1
Deletion	Chr3	26073765	26073768	3	LOC_Os03g46110
Deletion	Chr8	27287397	27287448	51
Deletion	Chr2	27351425	27351427	2
Deletion	Chr1	29476312	29476316	4
Deletion	Chr4	32855006	32855012	6
Deletion	Chr1	33747840	33747842	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20834624	20834627	4
Insertion	Chr11	25200701	25200701	1
Insertion	Chr12	24678974	24678975	2
Insertion	Chr5	13023477	13023479	3
Insertion	Chr5	268586	268586	1
Insertion	Chr5	28424124	28424124	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4357944	5269494	2
Inversion	Chr10	5155641	5269489	LOC_Os10g09740
Inversion	Chr10	5157907	5233725	LOC_Os10g09550
Inversion	Chr10	5212726	5233726
Inversion	Chr8	13866810	16628862	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4132491	Chr11	9057147	LOC_Os11g16390
Translocation	Chr10	15983598	Chr9	6740610
Translocation	Chr8	16628790	Chr3	6568952	2
Translocation	Chr12	23626310	Chr2	23584484