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Mutant Information |
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Mutant Name | 704-4-3 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download 704-4-3 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 6
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr10 | 12664659 | C-T | Homo | INTERGENIC | |
SBS | Chr11 | 14894290 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 14894291 | G-A | Homo | INTERGENIC | |
SBS | Chr12 | 6629708 | C-A | Homo | INTERGENIC | |
SBS | Chr7 | 9889321 | A-T | Homo | INTERGENIC | |
SBS | Chr9 | 19960056 | G-A | Homo | INTERGENIC |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 4714896 | 4714908 | 12 | |
Deletion | Chr9 | 5281833 | 5281869 | 36 | LOC_Os09g09760 |
Deletion | Chr11 | 8925001 | 9057000 | 132000 | 17 |
Deletion | Chr8 | 10873325 | 10873326 | 1 | |
Deletion | Chr1 | 11607856 | 11607859 | 3 | |
Deletion | Chr12 | 22066178 | 22066181 | 3 | |
Deletion | Chr8 | 22201140 | 22201141 | 1 | |
Deletion | Chr2 | 23584002 | 23584492 | 490 | |
Deletion | Chr7 | 23752211 | 23752212 | 1 | |
Deletion | Chr3 | 26073765 | 26073768 | 3 | LOC_Os03g46110 |
Deletion | Chr8 | 27287397 | 27287448 | 51 | |
Deletion | Chr2 | 27351425 | 27351427 | 2 | |
Deletion | Chr1 | 29476312 | 29476316 | 4 | |
Deletion | Chr4 | 32855006 | 32855012 | 6 | |
Deletion | Chr1 | 33747840 | 33747842 | 2 |
Insertions: 6
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr10 | 4357944 | 5269494 | 2 |
Inversion | Chr10 | 5155641 | 5269489 | LOC_Os10g09740 |
Inversion | Chr10 | 5157907 | 5233725 | LOC_Os10g09550 |
Inversion | Chr10 | 5212726 | 5233726 | |
Inversion | Chr8 | 13866810 | 16628862 | 2 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 4132491 | Chr11 | 9057147 | LOC_Os11g16390 |
Translocation | Chr10 | 15983598 | Chr9 | 6740610 | |
Translocation | Chr8 | 16628790 | Chr3 | 6568952 | 2 |
Translocation | Chr12 | 23626310 | Chr2 | 23584484 |