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Mutant Information

Mutant Name	704-5 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 704-5 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7784021	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13890
SBS	Chr1	7784022	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13890
SBS	Chr12	6629708	C-A	Homo	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	337838	337842	4
Deletion	Chr11	3922120	3922122	2
Deletion	Chr1	7746347	7746351	4	LOC_Os01g13810
Deletion	Chr1	7780438	7780440	2	LOC_Os01g13880
Deletion	Chr3	9270514	9271602	1088	LOC_Os03g16740
Deletion	Chr1	9312314	9312315	1
Deletion	Chr3	9565323	9565327	4
Deletion	Chr9	11957774	11957792	18
Deletion	Chr2	14475394	14475399	5	LOC_Os02g24970
Deletion	Chr9	20731759	20731777	18	LOC_Os09g35980
Deletion	Chr11	22507113	22507115	2	LOC_Os11g37960
Deletion	Chr1	35417560	35417561	1	2
Deletion	Chr1	39510537	39510547	10

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	21375654	21375654	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	9917766	9932933
Inversion	Chr6	9917790	9933003
Inversion	Chr12	13391012	17346872

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10822849	Chr4	9875148
Translocation	Chr9	10822857	Chr4	9875548