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Mutant Information |
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Mutant Name | 705-3 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download 705-3 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 10
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr7 | 6542279 | C-G | Homo | INTERGENIC | |
SBS | Chr11 | 20502897 | C-T | Homo | UTR_5_PRIME | |
SBS | Chr1 | 10195937 | A-G | HET | INTRON | |
SBS | Chr1 | 17833819 | G-T | Homo | INTERGENIC | |
SBS | Chr6 | 10116809 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 20626839 | G-T | Homo | SYNONYMOUS_CODING | |
SBS | Chr7 | 29129031 | A-T | Homo | INTERGENIC | |
SBS | Chr7 | 29448587 | A-G | Homo | INTRON | |
SBS | Chr8 | 3016974 | T-C | HET | INTERGENIC | |
SBS | Chr12 | 24971215 | G-A | Homo | INTERGENIC |
Deletions: 18
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 843525 | 843526 | 1 | |
Deletion | Chr3 | 1271990 | 1272006 | 16 | |
Deletion | Chr4 | 2112377 | 2112391 | 14 | LOC_Os04g04430 |
Deletion | Chr5 | 2733827 | 2733828 | 1 | |
Deletion | Chr3 | 4624126 | 4624134 | 8 | |
Deletion | Chr3 | 7437790 | 7437795 | 5 | LOC_Os03g13730 |
Deletion | Chr12 | 8162672 | 8162674 | 2 | LOC_Os12g14330 |
Deletion | Chr1 | 8331951 | 8331963 | 12 | LOC_Os01g14860 |
Deletion | Chr6 | 10107826 | 10107838 | 12 | |
Deletion | Chr3 | 10178376 | 10178377 | 1 | |
Deletion | Chr12 | 16916001 | 17120000 | 204000 | 33 |
Deletion | Chr4 | 22149134 | 22149139 | 5 | |
Deletion | Chr4 | 23869799 | 23869837 | 38 | LOC_Os04g40090 |
Deletion | Chr5 | 23911088 | 23911089 | 1 | |
Deletion | Chr3 | 26461919 | 26461921 | 2 | |
Deletion | Chr5 | 27536454 | 27536455 | 1 | |
Deletion | Chr4 | 28014703 | 28014714 | 11 | |
Deletion | Chr4 | 35074674 | 35074677 | 3 | LOC_Os04g58960 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 7991019 | 7991019 | 1 | |
Insertion | Chr5 | 7993569 | 7993569 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr12 | 16915388 | 17476919 | |
Inversion | Chr12 | 17476954 | 18416339 | |
Inversion | Chr12 | 23951725 | 24129638 | LOC_Os12g38950 |
No Translocation