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Mutant Information

Mutant Name	705-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 705-3 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 10

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10195937	A-G	HET	INTRON
SBS	Chr1	17833819	G-T	Homo	INTERGENIC
SBS	Chr11	20502897	C-T	Homo	UTR_5_PRIME
SBS	Chr12	24971215	G-A	Homo	INTERGENIC
SBS	Chr6	10116809	A-G	HET	INTERGENIC
SBS	Chr6	20626839	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	29129031	A-T	Homo	INTERGENIC
SBS	Chr7	29448587	A-G	Homo	INTRON
SBS	Chr7	6542279	C-G	Homo	INTERGENIC
SBS	Chr8	3016974	T-C	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	843525	843526	1
Deletion	Chr3	1271990	1272006	16
Deletion	Chr4	2112377	2112391	14	LOC_Os04g04430
Deletion	Chr5	2733827	2733828	1
Deletion	Chr3	4624126	4624134	8
Deletion	Chr3	7437790	7437795	5	LOC_Os03g13730
Deletion	Chr12	8162672	8162674	2	LOC_Os12g14330
Deletion	Chr1	8331951	8331963	12	LOC_Os01g14860
Deletion	Chr6	10107826	10107838	12
Deletion	Chr3	10178376	10178377	1
Deletion	Chr12	16916001	17120000	204000	33
Deletion	Chr4	22149134	22149139	5
Deletion	Chr4	23869799	23869837	38	LOC_Os04g40090
Deletion	Chr5	23911088	23911089	1
Deletion	Chr3	26461919	26461921	2
Deletion	Chr5	27536454	27536455	1
Deletion	Chr4	28014703	28014714	11
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	7991019	7991019	1
Insertion	Chr5	7993569	7993569	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	16915388	17476919
Inversion	Chr12	17476954	18416339
Inversion	Chr12	23951725	24129638	LOC_Os12g38950

No Translocation