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| Mutant Information |
|---|
| Mutant Name | 705-6 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 705-6 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 18
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17833819 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 25030464 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g43680 |
| SBS | Chr10 | 11907534 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 18109766 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g30160 |
| SBS | Chr12 | 3631364 | A-T | Homo | INTRON | |
| SBS | Chr12 | 4330728 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 9220277 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 14519326 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 26562511 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 6286043 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 5188696 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 22983577 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 17412296 | A-G | Homo | INTRON | |
| SBS | Chr6 | 26983225 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 22253406 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 27720002 | C-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 27822056 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 7940358 | T-C | Homo | INTRON |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2617373 | 2617376 | 3 | |
| Deletion | Chr9 | 3458160 | 3458163 | 3 | |
| Deletion | Chr1 | 6720001 | 6736000 | 16000 | 4 |
| Deletion | Chr2 | 6778813 | 6778831 | 18 | |
| Deletion | Chr1 | 10432236 | 10432269 | 33 | |
| Deletion | Chr1 | 10848613 | 10848614 | 1 | |
| Deletion | Chr10 | 13521446 | 13521447 | 1 | |
| Deletion | Chr9 | 15007079 | 15007080 | 1 | |
| Deletion | Chr11 | 15234287 | 15234290 | 3 | |
| Deletion | Chr5 | 15639001 | 15945000 | 306000 | 44 |
| Deletion | Chr1 | 16744526 | 16744539 | 13 | |
| Deletion | Chr5 | 16779828 | 16780709 | 881 | |
| Deletion | Chr2 | 16928061 | 16928064 | 3 | |
| Deletion | Chr4 | 17490063 | 17490067 | 4 | |
| Deletion | Chr5 | 22359537 | 22359546 | 9 | |
| Deletion | Chr6 | 22823931 | 22823934 | 3 | |
| Deletion | Chr2 | 25960669 | 25960675 | 6 | |
| Deletion | Chr7 | 26836515 | 26836518 | 3 | |
| Deletion | Chr4 | 35074674 | 35074677 | 3 | LOC_Os04g58960 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 12717709 | 12717709 | 1 | |
| Insertion | Chr1 | 7907301 | 7907301 | 1 | |
| Insertion | Chr10 | 19289058 | 19289060 | 3 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 6570616 | 6720006 | |
| Inversion | Chr1 | 6570633 | 6735764 | LOC_Os01g12340 |
| Inversion | Chr5 | 15945006 | 16216966 | 2 |
| Inversion | Chr1 | 38028413 | 39135467 | LOC_Os01g65520 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 3404433 | Chr5 | 15110170 | LOC_Os11g06920 |
| Translocation | Chr11 | 3404503 | Chr5 | 15111944 | LOC_Os11g06920 |
| Translocation | Chr5 | 16779835 | Chr1 | 38028431 | LOC_Os01g65520 |
| Translocation | Chr5 | 16780705 | Chr1 | 39135467 | |
| Translocation | Chr10 | 19756658 | Chr7 | 19540424 |