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Mutant Information

Mutant Name	706-2 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 706-2 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr12	24234864	G-A	HET	INTERGENIC
SBS	Chr12	24618155	C-A	HET	INTERGENIC
SBS	Chr12	24618159	G-T	HET	INTERGENIC
SBS	Chr3	8302350	A-T	HET	INTRON
SBS	Chr5	8664270	C-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1793161	1793163	2
Deletion	Chr5	2566697	2566724	27
Deletion	Chr11	2944352	2945175	823
Deletion	Chr1	6980665	6980690	25	LOC_Os01g12670
Deletion	Chr3	7668984	7668987	3
Deletion	Chr3	10377974	10377975	1
Deletion	Chr10	11054204	11054206	2	LOC_Os10g21590
Deletion	Chr9	13865291	13865298	7
Deletion	Chr1	13923211	13923216	5
Deletion	Chr3	15177946	15177950	4
Deletion	Chr10	19192690	19192693	3
Deletion	Chr5	20772086	20772087	1
Deletion	Chr7	22315276	22315303	27
Deletion	Chr8	23910215	23910218	3
Deletion	Chr11	24287834	24287842	8
Deletion	Chr1	25538841	25538846	5	LOC_Os01g45010
Deletion	Chr11	25630828	25630833	5	LOC_Os11g42580
Deletion	Chr1	29274842	29274846	4
Deletion	Chr3	36162274	36162278	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23593308	23593309	2
Insertion	Chr1	2961170	2961175	6
Insertion	Chr2	33726228	33726229	2
Insertion	Chr8	15992326	15992326	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3388847	4871161	LOC_Os01g07170

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2944358	Chr3	24807537
Translocation	Chr11	2945167	Chr3	24807545