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Mutant Information |
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Mutant Name | 707-1 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download 707-1 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 4
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 9838064 | C-T | Homo | INTERGENIC | |
SBS | Chr1 | 6534939 | C-A | Homo | SYNONYMOUS_CODING | |
SBS | Chr4 | 22586400 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g37960 |
SBS | Chr10 | 8569850 | C-A | HET | INTERGENIC |
Deletions: 27
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 792596 | 792604 | 8 | |
Deletion | Chr11 | 1962931 | 1962944 | 13 | |
Deletion | Chr11 | 2952512 | 2952513 | 1 | |
Deletion | Chr6 | 3921522 | 3923940 | 2418 | LOC_Os06g08080 |
Deletion | Chr10 | 7868918 | 7868928 | 10 | |
Deletion | Chr6 | 8641911 | 8641952 | 41 | |
Deletion | Chr9 | 8692461 | 8692468 | 7 | LOC_Os09g14670 |
Deletion | Chr3 | 8887846 | 8887866 | 20 | LOC_Os03g16110 |
Deletion | Chr3 | 11251221 | 11251269 | 48 | |
Deletion | Chr3 | 12034838 | 12034848 | 10 | |
Deletion | Chr11 | 13788677 | 13788679 | 2 | |
Deletion | Chr11 | 14686001 | 14798000 | 112000 | 19 |
Deletion | Chr1 | 16086123 | 16086150 | 27 | |
Deletion | Chr1 | 16353629 | 16353632 | 3 | |
Deletion | Chr8 | 17366591 | 17366592 | 1 | |
Deletion | Chr7 | 17547547 | 17547548 | 1 | |
Deletion | Chr9 | 20763809 | 20763812 | 3 | |
Deletion | Chr10 | 22149796 | 22149810 | 14 | |
Deletion | Chr6 | 22525599 | 22525600 | 1 | |
Deletion | Chr4 | 22589418 | 22589455 | 37 | |
Deletion | Chr8 | 25023751 | 25023755 | 4 | |
Deletion | Chr11 | 26046001 | 26061000 | 15000 | 3 |
Deletion | Chr2 | 28262365 | 28262373 | 8 | |
Deletion | Chr2 | 28541139 | 28541140 | 1 | |
Deletion | Chr5 | 29074293 | 29074294 | 1 | |
Deletion | Chr1 | 34406490 | 34406505 | 15 | LOC_Os01g59490 |
Deletion | Chr1 | 36599115 | 36599116 | 1 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr8 | 23611468 | 23611469 | 2 | |
Insertion | Chr11 | 13787528 | 13787528 | 1 | |
Insertion | Chr4 | 20326665 | 20326665 | 1 |
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr11 | 4518064 | 13735009 | 2 |
Inversion | Chr11 | 4518797 | 13668328 | LOC_Os11g08550 |
Inversion | Chr11 | 14686545 | 14853063 | LOC_Os11g25750 |
Inversion | Chr11 | 14798085 | 14853078 | |
Inversion | Chr11 | 24899045 | 26059084 | LOC_Os11g41510 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 26043704 | Chr10 | 1079051 | LOC_Os10g02740 |
Translocation | Chr11 | 26046077 | Chr10 | 1079061 | LOC_Os10g02740 |