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Mutant Information

Variant Information

Single base substitutions: 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6534939	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	9838064	C-T	Homo	INTERGENIC
SBS	Chr10	8569850	C-A	HET	INTERGENIC
SBS	Chr4	22586400	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g37960

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	792596	792604	8
Deletion	Chr11	1962931	1962944	13
Deletion	Chr11	2952512	2952513	1
Deletion	Chr6	3921522	3923940	2418	LOC_Os06g08080
Deletion	Chr10	7868918	7868928	10
Deletion	Chr6	8641911	8641952	41
Deletion	Chr9	8692461	8692468	7	LOC_Os09g14670
Deletion	Chr3	8887846	8887866	20	LOC_Os03g16110
Deletion	Chr3	11251221	11251269	48
Deletion	Chr3	12034838	12034848	10
Deletion	Chr11	13788677	13788679	2
Deletion	Chr11	14686001	14798000	112000	19
Deletion	Chr1	16086123	16086150	27
Deletion	Chr1	16353629	16353632	3
Deletion	Chr8	17366591	17366592	1
Deletion	Chr7	17547547	17547548	1
Deletion	Chr9	20763809	20763812	3
Deletion	Chr10	22149796	22149810	14
Deletion	Chr6	22525599	22525600	1
Deletion	Chr4	22589418	22589455	37
Deletion	Chr8	25023751	25023755	4
Deletion	Chr11	26046001	26061000	15000	3
Deletion	Chr2	28262365	28262373	8
Deletion	Chr2	28541139	28541140	1
Deletion	Chr5	29074293	29074294	1
Deletion	Chr1	34406490	34406505	15	LOC_Os01g59490
Deletion	Chr1	36599115	36599116	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	13787528	13787528	1
Insertion	Chr4	20326665	20326665	1
Insertion	Chr8	23611468	23611469	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4518064	13735009	2
Inversion	Chr11	4518797	13668328	LOC_Os11g08550
Inversion	Chr11	14686545	14853063	LOC_Os11g25750
Inversion	Chr11	14798085	14853078
Inversion	Chr11	24899045	26059084	LOC_Os11g41510

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	26043704	Chr10	1079051	LOC_Os10g02740
Translocation	Chr11	26046077	Chr10	1079061	LOC_Os10g02740

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