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Mutant Information

Mutant Name	707-2 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 707-2 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6534939	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	15573554	C-T	Homo	INTERGENIC
SBS	Chr10	8569850	C-A	Homo	INTERGENIC
SBS	Chr2	7242924	G-A	Homo	INTERGENIC
SBS	Chr3	31783698	C-T	Homo	INTERGENIC
SBS	Chr4	22586400	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g37960
SBS	Chr4	31436986	T-C	Homo	INTERGENIC
SBS	Chr8	22283208	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2952512	2952513	1
Deletion	Chr6	3921522	3923940	2418	LOC_Os06g08080
Deletion	Chr2	6695865	6695866	1
Deletion	Chr10	7868918	7868928	10
Deletion	Chr6	8641911	8641952	41
Deletion	Chr9	8692461	8692468	7	LOC_Os09g14670
Deletion	Chr3	8887846	8887866	20	LOC_Os03g16110
Deletion	Chr3	11251221	11251269	48
Deletion	Chr2	13182280	13182285	5
Deletion	Chr11	13788677	13788679	2
Deletion	Chr7	17171876	17171901	25
Deletion	Chr2	19034339	19034340	1	LOC_Os02g32220
Deletion	Chr8	20246770	20246776	6	LOC_Os08g32680
Deletion	Chr9	20763809	20763812	3
Deletion	Chr6	22525599	22525600	1
Deletion	Chr4	22589418	22589455	37
Deletion	Chr11	26043001	26059000	16000	4
Deletion	Chr5	29074293	29074294	1
Deletion	Chr1	36599115	36599116	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	10695402	10695402	1
Insertion	Chr12	7765527	7765527	1
Insertion	Chr2	21458409	21458412	4
Insertion	Chr2	22592803	22592803	1
Insertion	Chr4	20326665	20326665	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4518064	13735009	2
Inversion	Chr11	4518797	13668328	LOC_Os11g08550
Inversion	Chr11	24899045	26059084	LOC_Os11g41510

No Translocation