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Mutant Information

Mutant Name	707-5 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 707-5 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr12	6545134	T-C	Homo	INTERGENIC
SBS	Chr3	24789463	C-T	Homo	INTERGENIC
SBS	Chr4	35194800	T-G	Homo	INTERGENIC
SBS	Chr4	7699075	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g13800
SBS	Chr6	3628855	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g07530
SBS	Chr8	22283208	G-A	Homo	INTERGENIC
SBS	Chr9	14425373	G-A	Homo	INTRON

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	792596	792604	8
Deletion	Chr6	8641911	8641952	41
Deletion	Chr9	8692461	8692468	7	LOC_Os09g14670
Deletion	Chr3	8887846	8887866	20	LOC_Os03g16110
Deletion	Chr3	11251221	11251269	48
Deletion	Chr3	12034838	12034848	10
Deletion	Chr11	14686001	14798000	112000	19
Deletion	Chr8	20246770	20246776	6	LOC_Os08g32680
Deletion	Chr9	20763809	20763812	3
Deletion	Chr6	21714196	21714214	18
Deletion	Chr1	21987267	21987270	3
Deletion	Chr10	22149796	22149810	14
Deletion	Chr11	26043001	26059000	16000	4
Deletion	Chr1	34406490	34406505	15	LOC_Os01g59490
Deletion	Chr1	36599115	36599116	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	13787528	13787528	1
Insertion	Chr3	13893975	13893975	1
Insertion	Chr4	20326665	20326665	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14686545	14853063	LOC_Os11g25750
Inversion	Chr11	14798085	14853078
Inversion	Chr11	24899045	26059084	LOC_Os11g41510

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	26043738	Chr10	1079040	LOC_Os10g02740