Search Nipponbare

Mutant Information

Mutant Name	707-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 707-6 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22113496	C-T	Homo	INTERGENIC
SBS	Chr1	6534939	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	8569850	C-A	HET	INTERGENIC
SBS	Chr4	22586400	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g37960
SBS	Chr8	17951136	A-T	Homo	INTERGENIC
SBS	Chr8	22283208	G-A	Homo	INTERGENIC
SBS	Chr9	4651766	C-A	Homo	INTRON

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1962931	1962944	13
Deletion	Chr11	2952512	2952513	1
Deletion	Chr6	3921522	3923940	2418	LOC_Os06g08080
Deletion	Chr10	4655093	4655094	1
Deletion	Chr2	6695865	6695866	1
Deletion	Chr10	7868918	7868928	10
Deletion	Chr6	8641911	8641952	41
Deletion	Chr9	8692461	8692468	7	LOC_Os09g14670
Deletion	Chr3	8887846	8887866	20	LOC_Os03g16110
Deletion	Chr3	11251221	11251269	48
Deletion	Chr11	14686001	14798000	112000	19
Deletion	Chr8	20246770	20246776	6	LOC_Os08g32680
Deletion	Chr9	20763809	20763812	3
Deletion	Chr10	22149796	22149810	14
Deletion	Chr3	22546504	22546505	1
Deletion	Chr4	22589418	22589455	37
Deletion	Chr1	37795126	37795129	3

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	13787528	13787528	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4518797	13668328	LOC_Os11g08550
Inversion	Chr11	14686545	14853063	LOC_Os11g25750
Inversion	Chr11	14798085	14853078

No Translocation