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Mutant Information

Mutant Name	707-7 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 707-7 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6534939	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	8569850	C-A	HET	INTERGENIC
SBS	Chr3	24789463	C-T	HET	INTERGENIC
SBS	Chr4	22586400	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g37960
SBS	Chr7	5511245	G-A	Homo	INTERGENIC
SBS	Chr8	1450506	A-T	Homo	INTERGENIC
SBS	Chr8	22283208	G-A	HET	INTERGENIC
SBS	Chr9	9754776	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g15960

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	792596	792604	8
Deletion	Chr11	2952512	2952513	1
Deletion	Chr6	3921522	3923940	2418	LOC_Os06g08080
Deletion	Chr10	7868918	7868928	10
Deletion	Chr9	8692461	8692468	7	LOC_Os09g14670
Deletion	Chr2	13182280	13182285	5
Deletion	Chr11	13668329	13735016	66687	9
Deletion	Chr11	13788677	13788679	2
Deletion	Chr1	16086123	16086150	27
Deletion	Chr1	16353629	16353632	3
Deletion	Chr3	17006033	17006051	18
Deletion	Chr1	21987267	21987270	3
Deletion	Chr10	22149796	22149810	14
Deletion	Chr6	22525599	22525600	1
Deletion	Chr4	22589418	22589455	37
Deletion	Chr10	22607035	22607037	2
Deletion	Chr1	36599115	36599116	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	22592803	22592803	1
Insertion	Chr4	20326665	20326665	1
Insertion	Chr6	21372446	21372451	6	LOC_Os06g36390

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14686545	14853063	LOC_Os11g25750
Inversion	Chr11	14798085	14853078
Inversion	Chr11	24899045	26059084	LOC_Os11g41510

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	26043718	Chr10	1079037	LOC_Os10g02740