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Mutant Information

Mutant Name	822-5-5 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 822-5-5 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr11	11761931	T-A	HET	INTERGENIC
SBS	Chr11	4002619	A-G	Homo	INTERGENIC
SBS	Chr3	6081651	C-A	Homo	INTRON
SBS	Chr5	1965199	A-G	Homo	INTERGENIC
SBS	Chr9	8394016	G-C	Homo	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3666960	3666964	4
Deletion	Chr6	7199964	7199965	1	LOC_Os06g13110
Deletion	Chr11	9936522	9936528	6
Deletion	Chr6	15487001	16121000	634000	94
Deletion	Chr7	15587623	15587632	9
Deletion	Chr1	18689574	18690249	675	LOC_Os01g33960
Deletion	Chr4	19775887	19775894	7
Deletion	Chr11	21901017	21901023	6
Deletion	Chr6	23820953	23820958	5
Deletion	Chr2	27505420	27505423	3
Deletion	Chr2	29119039	29119040	1	LOC_Os02g47660

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	6303029	6303030	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4240483	7368030	LOC_Os05g13300
Inversion	Chr11	12834973	13511488
Inversion	Chr7	17300173	17451568

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	7086142	Chr1	18689585	2