Search Results

Mutant Information

Mutant Name	822-5-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 822-5-6 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr4	13961091	T-C	Homo	INTERGENIC
SBS	Chr4	30458557	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr4	30606359	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g51640
SBS	Chr9	14757550	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g24770
SBS	Chr3	6081651	C-A	Homo	INTRON
SBS	Chr5	1965199	A-G	Homo	INTERGENIC
SBS	Chr9	8394016	G-C	Homo	INTERGENIC
SBS	Chr11	11761931	T-A	Homo	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3666960	3666964	4
Deletion	Chr7	4270180	4270181	1
Deletion	Chr6	7199964	7199965	1	LOC_Os06g13110
Deletion	Chr7	9341366	9341368	2
Deletion	Chr11	9936522	9936528	6
Deletion	Chr4	10961393	10961394	1
Deletion	Chr4	12593537	12593545	8
Deletion	Chr2	15653834	15653837	3	LOC_Os02g26660
Deletion	Chr1	18689574	18690249	675	LOC_Os01g33960
Deletion	Chr10	19252909	19252910	1
Deletion	Chr4	19775887	19775894	7
Deletion	Chr1	25550333	25550347	14
Deletion	Chr2	27505420	27505423	3
Deletion	Chr2	29119039	29119040	1	LOC_Os02g47660
Deletion	Chr4	30616337	30616339	2
Deletion	Chr1	35544374	35544378	4

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	20315618	20315627	10
Insertion	Chr1	14856011	14856019	9
Insertion	Chr2	18219646	18219654	9	LOC_Os02g30610
Insertion	Chr10	19475630	19475633	4
Insertion	Chr5	21765747	21765750	4
Insertion	Chr1	21498348	21498350	3
Insertion	Chr4	17788550	17788552	3
Insertion	Chr7	5284335	5284337	3
Insertion	Chr11	3710388	3710389	2
Insertion	Chr11	22168333	22168334	2
Insertion	Chr12	23551114	23551115	2
Insertion	Chr2	21772380	21772381	2
Insertion	Chr4	312993	312994	2
Insertion	Chr4	20701596	20701597	2
Insertion	Chr7	1241455	1241456	2
Insertion	Chr7	8787925	8787926	2
Insertion	Chr11	28956660	28956660	1
Insertion	Chr4	17708414	17708414	1
Insertion	Chr6	28570781	28570781	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4240483	7368030	LOC_Os05g13300
Inversion	Chr7	17300173	17451568

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	7086142	Chr1	18689585	2