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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1943371	T-C	HET	INTERGENIC
SBS	Chr1	5885182	T-G	HET	INTERGENIC
SBS	Chr1	9803957	A-G	HET	INTERGENIC
SBS	Chr1	14954828	G-A	HET	INTERGENIC
SBS	Chr1	34032394	C-T	HOMO	INTERGENIC
SBS	Chr1	41072801	A-T	HET	INTERGENIC
SBS	Chr1	41506063	T-G	HOMO	INTERGENIC
SBS	Chr2	4592143	T-C	HET	INTERGENIC
SBS	Chr2	15003444	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25650
SBS	Chr2	28446021	G-A	HOMO	INTERGENIC
SBS	Chr2	33685812	T-G	HET	INTERGENIC
SBS	Chr2	33685813	A-T	HET	INTERGENIC
SBS	Chr3	18626071	C-A	HET	INTERGENIC
SBS	Chr3	19392442	G-C	HET	INTERGENIC
SBS	Chr3	35471044	C-A	HET	INTRON
SBS	Chr4	471069	A-G	HET	INTERGENIC
SBS	Chr4	5025019	T-A	HET	INTERGENIC
SBS	Chr4	9626315	G-A	HOMO	INTERGENIC
SBS	Chr4	21204649	C-T	HET	INTERGENIC
SBS	Chr5	10110227	G-A	HET	INTERGENIC
SBS	Chr5	12921772	G-A	HET	INTERGENIC
SBS	Chr5	16116853	C-T	HET	INTERGENIC
SBS	Chr6	5586651	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g10700
SBS	Chr6	17151530	C-T	HET	INTERGENIC
SBS	Chr7	7995097	T-A	HET	INTERGENIC
SBS	Chr7	13003727	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g23040
SBS	Chr8	114709	G-T	HET	INTERGENIC
SBS	Chr8	2775455	T-A	HOMO	INTERGENIC
SBS	Chr8	3218678	A-G	HOMO	INTERGENIC
SBS	Chr8	17998984	G-T	HET	INTRON
SBS	Chr8	21257603	C-A	HET	STOP_GAINED	LOC_Os08g33950
SBS	Chr8	21833800	T-A	HET	INTERGENIC
SBS	Chr8	24092392	C-G	HET	INTRON
SBS	Chr8	25415163	C-T	HET	INTERGENIC
SBS	Chr10	1281277	C-A	HOMO	INTRON
SBS	Chr11	6278574	C-G	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	203434	203435	1
Deletion	Chr4	315924	315930	6
Deletion	Chr12	4469423	4469424	1
Deletion	Chr7	9699940	9699941	1
Deletion	Chr8	10939488	10939489	1
Deletion	Chr11	11223888	11223889	1	LOC_Os11g19490
Deletion	Chr12	14041939	14041943	4
Deletion	Chr7	14490903	14490904	1
Deletion	Chr10	14786931	14786935	4
Deletion	Chr6	15919064	15919065	1
Deletion	Chr10	17561535	17561536	1
Deletion	Chr8	18063977	18063980	3
Deletion	Chr3	19021462	19021466	4	LOC_Os03g33250
Deletion	Chr10	20095669	20095680	11	LOC_Os10g37530
Deletion	Chr12	21058773	21058783	10
Deletion	Chr8	22755608	22755609	1	LOC_Os08g36110
Deletion	Chr3	23556445	23556446	1	LOC_Os03g42350
Deletion	Chr8	23636160	23636161	1
Deletion	Chr4	24266581	24266582	1
Deletion	Chr11	26337939	26337940	1
Deletion	Chr1	28154753	28154776	23
Deletion	Chr3	29763747	29763748	1
Deletion	Chr3	34101934	34101962	28
Deletion	Chr1	36372999	36373004	5

Insertions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	18282605	18282631	27
Insertion	Chr4	16564311	16564332	22
Insertion	Chr8	15195584	15195595	12
Insertion	Chr1	563933	563942	10
Insertion	Chr11	24951614	24951620	7
Insertion	Chr11	15005513	15005518	6
Insertion	Chr8	14740268	14740273	6
Insertion	Chr11	6203339	6203342	4
Insertion	Chr2	8864469	8864472	4
Insertion	Chr5	17289595	17289598	4
Insertion	Chr5	23220230	23220233	4
Insertion	Chr7	1905645	1905648	4
Insertion	Chr11	19576681	19576683	3
Insertion	Chr11	19601932	19601934	3
Insertion	Chr2	5449446	5449448	3
Insertion	Chr3	8186693	8186695	3	LOC_Os03g15000
Insertion	Chr7	3643477	3643479	3
Insertion	Chr1	4807434	4807435	2
Insertion	Chr1	8886536	8886537	2
Insertion	Chr1	15533204	15533205	2
Insertion	Chr10	2248535	2248536	2
Insertion	Chr11	7252336	7252337	2
Insertion	Chr11	16764607	16764608	2
Insertion	Chr12	3661338	3661339	2
Insertion	Chr2	17326875	17326876	2
Insertion	Chr2	18467879	18467880	2
Insertion	Chr5	6265174	6265175	2
Insertion	Chr6	19413111	19413112	2
Insertion	Chr7	1241455	1241456	2
Insertion	Chr7	5077850	5077851	2
Insertion	Chr7	29332646	29332647	2
Insertion	Chr9	10327470	10327471	2
Insertion	Chr1	14267911	14267911	1
Insertion	Chr6	5430345	5430345	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1267912	1882617	LOC_Os04g03080
Inversion	Chr9	15505731	15653374	LOC_Os09g25860

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11747208	Chr7	9125995	LOC_Os10g22620

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