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| Mutant Information |
|---|
| Mutant Name | FN-103 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-103 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11630586 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g20860 |
| SBS | Chr1 | 435026 | A-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 13729951 | A-C | HET | INTERGENIC | |
| SBS | Chr10 | 18014287 | T-A | HET | INTRON | |
| SBS | Chr10 | 8928867 | C-T | HOMO | UTR_3_PRIME | |
| SBS | Chr11 | 16840146 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 2721140 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g05840 |
| SBS | Chr11 | 28917805 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 14584981 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr2 | 12067953 | G-A | HET | INTRON | |
| SBS | Chr2 | 17259792 | C-A | HOMO | INTRON | |
| SBS | Chr2 | 25220268 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 4760785 | G-C | HET | INTERGENIC | |
| SBS | Chr2 | 5416327 | T-A | HET | INTRON | |
| SBS | Chr2 | 9442653 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 15412814 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g26960 |
| SBS | Chr4 | 3101012 | T-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 15181615 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 17754192 | T-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 25995679 | T-C | HET | INTRON | |
| SBS | Chr6 | 933715 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g02630 |
| SBS | Chr7 | 15031488 | T-G | HET | INTERGENIC | |
| SBS | Chr7 | 15113017 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 16512845 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 5938947 | T-A | HET | SYNONYMOUS_CODING |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2176255 | 2176261 | 6 | |
| Deletion | Chr11 | 3150232 | 3150235 | 3 | |
| Deletion | Chr11 | 3530609 | 3530625 | 16 | |
| Deletion | Chr12 | 7110355 | 7110358 | 3 | |
| Deletion | Chr5 | 7569820 | 7576096 | 6276 | LOC_Os05g13670 |
| Deletion | Chr3 | 9476799 | 9476806 | 7 | |
| Deletion | Chr10 | 10930149 | 10930152 | 3 | |
| Deletion | Chr10 | 12878394 | 12878399 | 5 | |
| Deletion | Chr6 | 14105792 | 14105795 | 3 | LOC_Os06g24100 |
| Deletion | Chr9 | 14194873 | 14194876 | 3 | |
| Deletion | Chr9 | 18227278 | 18227285 | 7 | |
| Deletion | Chr5 | 18515850 | 18515851 | 1 | |
| Deletion | Chr8 | 19422105 | 19422115 | 10 | |
| Deletion | Chr1 | 21924398 | 21924421 | 23 | |
| Deletion | Chr1 | 39193372 | 39193373 | 1 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 20549773 | 20549774 | 2 | LOC_Os01g36900 |
| Insertion | Chr1 | 27782763 | 27782764 | 2 | |
| Insertion | Chr1 | 6720085 | 6720085 | 1 | |
| Insertion | Chr3 | 8163030 | 8163032 | 3 | |
| Insertion | Chr8 | 27181136 | 27181136 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 21217642 | 21430030 |
No Translocation