Search Results
| Mutant Information |
|---|
| Mutant Name | FN-104 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-104 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13916769 | G-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 21712202 | G-C | HET | INTERGENIC | |
| SBS | Chr1 | 33779982 | G-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 36144624 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g62440 |
| SBS | Chr2 | 4222790 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g08030 |
| SBS | Chr2 | 7440564 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr2 | 9597057 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 806746 | A-T | HOMO | INTRON | |
| SBS | Chr3 | 7052067 | T-G | HET | INTERGENIC | |
| SBS | Chr3 | 16866023 | G-T | HOMO | INTRON | |
| SBS | Chr3 | 29583366 | G-C | HET | INTRON | |
| SBS | Chr3 | 31696047 | C-T | HET | INTRON | |
| SBS | Chr4 | 14613761 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 18395644 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 21528273 | T-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 4400486 | C-T | HET | INTRON | |
| SBS | Chr6 | 19457526 | A-C | HET | INTRON | |
| SBS | Chr6 | 26238325 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 1972483 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 1972484 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 7853027 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g13680 |
| SBS | Chr7 | 22693896 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g37840 |
| SBS | Chr7 | 24047745 | G-C | HET | INTERGENIC | |
| SBS | Chr8 | 27753465 | G-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 12153639 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 12153641 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 12153642 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 13341922 | T-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr9 | 19628381 | C-T | HET | INTRON | |
| SBS | Chr10 | 3765584 | T-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 6638127 | G-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 3984410 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g07800 |
| SBS | Chr11 | 3984411 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g07800 |
| SBS | Chr11 | 13804119 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 14783432 | C-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 28730010 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 1428827 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g03570 |
| SBS | Chr12 | 15272023 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 16252154 | C-A | HOMO | INTERGENIC |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 158641 | 158660 | 19 | |
| Deletion | Chr3 | 6539231 | 6539234 | 3 | |
| Deletion | Chr3 | 7714187 | 7715765 | 1578 | LOC_Os03g14220 |
| Deletion | Chr2 | 12164807 | 12164808 | 1 | |
| Deletion | Chr5 | 13401529 | 13401536 | 7 | |
| Deletion | Chr10 | 13930271 | 13930272 | 1 | |
| Deletion | Chr6 | 17870889 | 17870898 | 9 | |
| Deletion | Chr3 | 18537340 | 18537348 | 8 | |
| Deletion | Chr11 | 19792475 | 19792477 | 2 | LOC_Os11g33458 |
| Deletion | Chr7 | 22341966 | 22341968 | 2 | |
| Deletion | Chr3 | 23376162 | 23376163 | 1 | |
| Deletion | Chr8 | 25160936 | 25160943 | 7 | |
| Deletion | Chr8 | 27442001 | 27506000 | 64000 | 9 |
| Deletion | Chr8 | 27644221 | 27644222 | 1 | |
| Deletion | Chr4 | 32734932 | 32734933 | 1 | |
| Deletion | Chr1 | 37246482 | 37246488 | 6 | LOC_Os01g64130 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 14941218 | 14941219 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 36322330 | 36962197 |
No Translocation