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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22127996	T-C	HET	INTRON
SBS	Chr1	26790232	T-C	HOMO	INTERGENIC
SBS	Chr1	36779460	T-A	HET	INTERGENIC
SBS	Chr1	38536388	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g66350
SBS	Chr10	11290587	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g21920
SBS	Chr10	3334805	G-T	HET	SYNONYMOUS_CODING
SBS	Chr12	14600409	T-A	HET	INTERGENIC
SBS	Chr2	11090872	C-T	HOMO	INTRON
SBS	Chr2	17537158	G-A	HET	INTRON
SBS	Chr2	3666926	G-T	HET	INTRON
SBS	Chr3	22384978	G-A	HET	INTERGENIC
SBS	Chr3	2796713	T-C	HOMO	INTERGENIC
SBS	Chr3	3268638	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g06510
SBS	Chr3	7902528	T-G	HET	INTERGENIC
SBS	Chr4	1423146	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g03330
SBS	Chr4	17030810	G-T	HET	INTERGENIC
SBS	Chr4	21534472	T-C	HET	INTERGENIC
SBS	Chr4	22637780	G-A	HET	INTERGENIC
SBS	Chr4	28829000	T-C	HET	INTRON
SBS	Chr5	13117409	C-G	HOMO	INTERGENIC
SBS	Chr5	1347366	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g03310
SBS	Chr5	15264211	C-T	HOMO	INTERGENIC
SBS	Chr5	19884556	C-T	HOMO	INTERGENIC
SBS	Chr5	28112135	T-C	HOMO	INTERGENIC
SBS	Chr5	28909955	G-C	HET	INTRON
SBS	Chr5	7512386	G-T	HET	INTERGENIC
SBS	Chr6	6426650	A-C	HOMO	INTERGENIC
SBS	Chr7	8509731	C-T	HET	INTRON
SBS	Chr9	2095217	T-A	HOMO	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2408001	2418000	10000	2
Deletion	Chr5	3409745	3409891	146
Deletion	Chr6	3429432	3429451	19
Deletion	Chr7	10284250	10284251	1	LOC_Os07g17420
Deletion	Chr2	11054650	11054655	5
Deletion	Chr12	12776001	12870000	94000	19
Deletion	Chr12	12877001	13049000	172000	23
Deletion	Chr2	13299673	13299761	88
Deletion	Chr10	13943799	13943800	1
Deletion	Chr12	14597369	14597380	11
Deletion	Chr6	15656450	15656459	9	LOC_Os06g27650
Deletion	Chr8	17489360	17489375	15
Deletion	Chr12	19759465	19759477	12
Deletion	Chr12	19831670	19831676	6
Deletion	Chr2	20163519	20163527	8
Deletion	Chr3	24411917	24411918	1
Deletion	Chr1	27079114	27079115	1
Deletion	Chr8	27534464	27534480	16
Deletion	Chr6	28953442	28953466	24	LOC_Os06g47834
Deletion	Chr4	33856760	33856769	9	LOC_Os04g56770

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	22224092	22224092	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2408001	2952887	2
Inversion	Chr8	2952895	3228316

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1850752	Chr5	16576756	2
Translocation	Chr9	22216306	Chr6	26613732	LOC_Os09g38620

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