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| Mutant Information |
|---|
| Mutant Name | FN-107 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-107 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24260944 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 25999769 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 28683279 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 28704818 | C-G | HET | INTRON | |
| SBS | Chr1 | 29715640 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 37173534 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 38585867 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g66460 |
| SBS | Chr1 | 41049796 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 3026808 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 10607271 | C-G | HET | INTRON | |
| SBS | Chr12 | 2960313 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g06230 |
| SBS | Chr2 | 11846728 | C-T | HET | STOP_GAINED | LOC_Os02g20110 |
| SBS | Chr2 | 19470805 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 22798642 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g37790 |
| SBS | Chr3 | 20972917 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 23144813 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 24369605 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g41090 |
| SBS | Chr4 | 28748525 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 14916725 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 2672429 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 6217439 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 8284673 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 1140837 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 20349655 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 20866418 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 6550088 | A-T | HET | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 439764 | 439779 | 15 | LOC_Os07g01740 |
| Deletion | Chr11 | 1563000 | 1563024 | 24 | LOC_Os11g03910 |
| Deletion | Chr10 | 2987001 | 3024000 | 37000 | 7 |
| Deletion | Chr8 | 5517001 | 5529000 | 12000 | 3 |
| Deletion | Chr1 | 10055863 | 10055867 | 4 | |
| Deletion | Chr9 | 11501325 | 11501326 | 1 | |
| Deletion | Chr4 | 16208608 | 16208609 | 1 | LOC_Os04g27420 |
| Deletion | Chr9 | 16657489 | 16657490 | 1 | |
| Deletion | Chr11 | 16893710 | 16893715 | 5 | |
| Deletion | Chr2 | 17842556 | 17842557 | 1 | LOC_Os02g30040 |
| Deletion | Chr11 | 19259794 | 19259801 | 7 | |
| Deletion | Chr6 | 19938715 | 19938716 | 1 | |
| Deletion | Chr3 | 22151557 | 22151558 | 1 | LOC_Os03g39830 |
| Deletion | Chr7 | 27941446 | 27941447 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 33401530 | 33401531 | 2 | |
| Insertion | Chr10 | 3515689 | 3515689 | 1 | LOC_Os10g06760 |
| Insertion | Chr3 | 12018148 | 12018148 | 1 | |
| Insertion | Chr8 | 26498780 | 26498780 | 1 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 3024144 | 3309159 | |
| Inversion | Chr8 | 5517033 | 5717216 | LOC_Os08g09900 |
| Inversion | Chr8 | 5529006 | 5722597 | LOC_Os08g09910 |
| Inversion | Chr1 | 20345917 | 20479134 | |
| Inversion | Chr8 | 24077255 | 24237606 | |
| Inversion | Chr2 | 29680331 | 30682755 | |
| Inversion | Chr2 | 29680343 | 30682764 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 1887456 | Chr1 | 28698932 | LOC_Os06g04399 |
| Translocation | Chr6 | 1887458 | Chr1 | 28683068 | LOC_Os06g04399 |
| Translocation | Chr8 | 5722353 | Chr6 | 24744283 | LOC_Os08g09910 |
| Translocation | Chr8 | 5722561 | Chr6 | 24744303 | LOC_Os08g09910 |