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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3588347	A-G	HET	INTERGENIC
SBS	Chr1	7603761	G-A	HOMO	INTERGENIC
SBS	Chr1	9835883	C-T	HET	INTRON
SBS	Chr12	23779575	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	27902576	C-T	HET	INTERGENIC
SBS	Chr3	18657697	C-A	HET	INTRON
SBS	Chr4	19159347	G-A	HOMO	INTRON
SBS	Chr4	26761060	C-A	HET	INTERGENIC
SBS	Chr4	28792732	T-A	HOMO	INTERGENIC
SBS	Chr4	28792733	C-A	HOMO	INTERGENIC
SBS	Chr4	6273210	C-A	HOMO	INTERGENIC
SBS	Chr5	14089159	C-T	HET	INTRON
SBS	Chr5	17731473	T-A	HET	STOP_GAINED	LOC_Os05g30610
SBS	Chr5	6796784	A-T	HET	SYNONYMOUS_CODING
SBS	Chr6	16595957	T-A	HET	INTRON
SBS	Chr6	31199284	G-A	HOMO	INTERGENIC
SBS	Chr6	943530	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g02650
SBS	Chr7	16285944	T-C	HET	INTERGENIC
SBS	Chr7	1970075	T-C	HET	INTRON
SBS	Chr7	20457473	A-G	HET	INTERGENIC
SBS	Chr8	15331014	C-T	HOMO	INTRON
SBS	Chr8	21790032	T-C	HET	INTERGENIC
SBS	Chr9	21223034	C-T	HOMO	UTR_5_PRIME
SBS	Chr9	7289668	C-T	HET	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	71145	71149	4	LOC_Os05g01050
Deletion	Chr12	2378542	2378549	7
Deletion	Chr1	3956094	3956131	37
Deletion	Chr5	6472001	6769000	297000	39
Deletion	Chr2	12719263	12719273	10
Deletion	Chr10	14770141	14770142	1
Deletion	Chr2	15020069	15020074	5
Deletion	Chr5	15074663	15074667	4
Deletion	Chr12	18739528	18739533	5
Deletion	Chr1	19136001	19216000	80000	11
Deletion	Chr4	22361097	22361099	2	LOC_Os04g37590
Deletion	Chr6	24068852	24068853	1
Deletion	Chr4	25073118	25073128	10
Deletion	Chr8	27788436	27788440	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	8574326	8574327	2
Insertion	Chr4	29586603	29586603	1
Insertion	Chr8	26815767	26815768	2

No Inversion

No Translocation

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