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Mutant Information

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23118798	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g40870
SBS	Chr1	26092251	G-A	HET	INTERGENIC
SBS	Chr1	40623501	A-G	HET	INTERGENIC
SBS	Chr1	40623504	A-T	HET	INTERGENIC
SBS	Chr1	40962450	G-A	HET	UTR_3_PRIME
SBS	Chr11	2700924	A-G	HET	INTERGENIC
SBS	Chr11	2760410	G-A	HOMO	INTRON
SBS	Chr12	7648994	G-A	HET	INTERGENIC
SBS	Chr2	10750654	G-A	HOMO	INTERGENIC
SBS	Chr2	9457488	T-A	HET	INTERGENIC
SBS	Chr3	20075873	A-G	HET	INTERGENIC
SBS	Chr4	20319840	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	9431695	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17190
SBS	Chr5	11954732	G-A	HET	INTERGENIC
SBS	Chr5	11954733	G-A	HET	INTERGENIC
SBS	Chr5	24344810	T-G	HET	INTERGENIC
SBS	Chr6	13394392	T-C	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1138001	1280000	142000	22
Deletion	Chr4	2459482	2459483	1
Deletion	Chr8	2463415	2463421	6
Deletion	Chr9	3176408	3176409	1
Deletion	Chr7	4008228	4008244	16
Deletion	Chr2	5974953	5974954	1
Deletion	Chr6	6156001	6247000	91000	18
Deletion	Chr6	7726713	7726717	4
Deletion	Chr4	8091346	8091350	4
Deletion	Chr9	8568110	8568116	6
Deletion	Chr8	9010977	9010979	2
Deletion	Chr4	11190001	11208000	18000	3
Deletion	Chr8	11746528	11746538	10
Deletion	Chr8	13943882	13943901	19	LOC_Os08g23140
Deletion	Chr8	14421105	14421115	10
Deletion	Chr4	14482508	14482520	12
Deletion	Chr3	15695799	15695800	1
Deletion	Chr5	16223426	16223431	5
Deletion	Chr3	16368126	16368137	11
Deletion	Chr11	17354203	17354208	5
Deletion	Chr9	18085646	18085660	14	LOC_Os09g29750
Deletion	Chr4	18591312	18591321	9
Deletion	Chr11	20881888	20881899	11
Deletion	Chr5	22813961	22813967	6
Deletion	Chr6	23642836	23642837	1	LOC_Os06g39790
Deletion	Chr11	26744648	26744651	3
Deletion	Chr2	27049783	27049785	2
Deletion	Chr1	31184520	31184524	4
Deletion	Chr1	32681773	32681786	13
Deletion	Chr1	40549528	40549531	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23912303	23912304	2
Insertion	Chr12	9490478	9490479	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	908992	1137893	LOC_Os11g03160
Inversion	Chr6	5705174	6414766	LOC_Os06g10920
Inversion	Chr6	6247417	6414835	LOC_Os06g11790
Inversion	Chr5	8959058	9107171
Inversion	Chr5	8959070	9107170

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	909000	Chr4	21551884	LOC_Os04g35420
Translocation	Chr11	1273486	Chr4	21551884	LOC_Os04g35420
Translocation	Chr6	5705200	Chr2	2795566	LOC_Os06g10920
Translocation	Chr6	5709290	Chr2	2795578
Translocation	Chr6	6834288	Chr4	14515518	LOC_Os04g25130
Translocation	Chr6	6843035	Chr4	14515521	2

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