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Mutant Information

Variant Information

Single base substitutions: 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30799390	T-A	Homo	INTERGENIC
SBS	Chr3	22428164	A-G	Homo	INTERGENIC
SBS	Chr4	16977461	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g28650
SBS	Chr4	17372163	G-A	Homo	INTERGENIC
SBS	Chr9	17071614	T-C	Homo	INTERGENIC
SBS	Chr11	2318690	T-A	Homo	INTERGENIC
SBS	Chr12	19977184	G-A	Homo	INTRON

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	435696	435697	1
Deletion	Chr7	1999845	1999850	5
Deletion	Chr5	2116636	2116637	1
Deletion	Chr8	2322210	2322212	2
Deletion	Chr1	4498345	4498353	8
Deletion	Chr7	5978770	5978771	1	LOC_Os07g10920
Deletion	Chr2	6397836	6397843	7
Deletion	Chr2	6699193	6699199	6
Deletion	Chr11	7930181	7930185	4
Deletion	Chr12	8006015	8006031	16
Deletion	Chr3	8150312	8150318	6
Deletion	Chr12	8398472	8398473	1
Deletion	Chr10	8445439	8445445	6
Deletion	Chr3	9443369	9443411	42
Deletion	Chr10	10592291	10592292	1
Deletion	Chr10	11093913	11093930	17	LOC_Os10g21660
Deletion	Chr2	14352500	14352506	6
Deletion	Chr3	15388656	15388658	2
Deletion	Chr4	15503628	15503632	4
Deletion	Chr8	18548061	18548324	263
Deletion	Chr7	19251470	19251473	3
Deletion	Chr11	19307382	19307383	1
Deletion	Chr1	20792001	20872000	80000	15
Deletion	Chr2	21694421	21694426	5
Deletion	Chr1	22683280	22685050	1770	LOC_Os01g40200
Deletion	Chr7	26390773	26390779	6
Deletion	Chr4	26968001	27172000	204000	29
Deletion	Chr1	29131499	29131514	15
Deletion	Chr3	30396289	30396305	16
Deletion	Chr3	30518997	30518998	1
Deletion	Chr3	33765850	33765891	41	LOC_Os03g59300

Insertions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	31492146	31492192	47
Insertion	Chr12	18282605	18282631	27
Insertion	Chr2	18910158	18910175	18
Insertion	Chr10	2738516	2738531	16
Insertion	Chr7	654349	654362	14
Insertion	Chr1	17797920	17797931	12
Insertion	Chr7	17244955	17244966	12	LOC_Os07g29360
Insertion	Chr1	28275230	28275235	6
Insertion	Chr7	22523286	22523291	6
Insertion	Chr11	18804838	18804841	4
Insertion	Chr12	24409288	24409291	4
Insertion	Chr4	4260793	4260796	4
Insertion	Chr6	7465993	7465996	4
Insertion	Chr7	22927207	22927210	4
Insertion	Chr5	822514	822516	3	LOC_Os05g02435
Insertion	Chr1	4620126	4620127	2
Insertion	Chr1	40623955	40623956	2
Insertion	Chr11	18385827	18385828	2
Insertion	Chr3	1109176	1109177	2
Insertion	Chr4	23421842	23421843	2
Insertion	Chr5	7814999	7815000	2
Insertion	Chr5	27925865	27925866	2
Insertion	Chr7	5268745	5268746	2
Insertion	Chr8	19719144	19719145	2	LOC_Os08g31800
Insertion	Chr8	23966610	23966611	2
Insertion	Chr9	15169579	15169580	2
Insertion	Chr10	12032515	12032515	1
Insertion	Chr3	32575446	32575446	1
Insertion	Chr4	19908181	19908181	1
Insertion	Chr7	29349950	29349950	1
Insertion	Chr9	726161	726161	1
Insertion	Chr9	19303927	19303927	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	15349936	15798199	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	8134135	Chr1	553282	2
Translocation	Chr3	8134144	Chr1	594029	LOC_Os03g14915
Translocation	Chr8	18548325	Chr1	594051
Translocation	Chr11	28430991	Chr8	18548085

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