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| Mutant Information |
|---|
| Mutant Name | FN-110 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-110 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr12 | 10006044 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 11802849 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g20240 |
| SBS | Chr12 | 19893829 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 24169800 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 13197278 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 3959736 | T-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 4457128 | C-A | HOMO | INTRON | |
| SBS | Chr2 | 6193169 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g11940 |
| SBS | Chr3 | 15814378 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 31622731 | C-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 34698358 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 9233155 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 14877158 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 1606443 | G-T | HET | INTRON | |
| SBS | Chr4 | 27406812 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 3098140 | C-G | HET | INTRON | |
| SBS | Chr5 | 23816762 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 23816763 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 24103234 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 11282523 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 17927625 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g29240 |
| SBS | Chr9 | 12915563 | A-T | HET | INTERGENIC |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1016739 | 1016744 | 5 | |
| Deletion | Chr11 | 2908059 | 2908060 | 1 | LOC_Os11g06110 |
| Deletion | Chr2 | 3414351 | 3414372 | 21 | |
| Deletion | Chr4 | 6877513 | 6877519 | 6 | |
| Deletion | Chr10 | 7563375 | 7563408 | 33 | |
| Deletion | Chr7 | 8629472 | 8629474 | 2 | |
| Deletion | Chr7 | 8630379 | 8630384 | 5 | |
| Deletion | Chr2 | 8988711 | 8988715 | 4 | |
| Deletion | Chr3 | 11334312 | 11334339 | 27 | |
| Deletion | Chr8 | 12075001 | 12124000 | 49000 | 7 |
| Deletion | Chr9 | 12915528 | 12915552 | 24 | |
| Deletion | Chr10 | 18086007 | 18086012 | 5 | |
| Deletion | Chr12 | 19557997 | 19557998 | 1 | LOC_Os12g32430 |
| Deletion | Chr12 | 20916717 | 20916718 | 1 | |
| Deletion | Chr5 | 21616692 | 21616693 | 1 | |
| Deletion | Chr4 | 25650165 | 25650173 | 8 | LOC_Os04g43380 |
| Deletion | Chr1 | 30992997 | 30993032 | 35 | |
| Deletion | Chr1 | 31252822 | 31252844 | 22 | LOC_Os01g54300 |
| Deletion | Chr3 | 32813842 | 32813846 | 4 | |
| Deletion | Chr2 | 33557193 | 33557195 | 2 | |
| Deletion | Chr1 | 34991478 | 34991501 | 23 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 19581250 | 19581253 | 4 | |
| Insertion | Chr11 | 7897062 | 7897062 | 1 | |
| Insertion | Chr3 | 3091301 | 3091301 | 1 | |
| Insertion | Chr9 | 9519873 | 9519873 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 25020046 | 25101097 | |
| Inversion | Chr3 | 25020070 | 25101110 |
No Translocation