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| Mutant Information |
|---|
| Mutant Name | FN-111 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-111 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20701525 | A-G | HOMO | INTRON | |
| SBS | Chr10 | 22517907 | T-A | HOMO | UTR_3_PRIME | |
| SBS | Chr12 | 12231159 | T-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 16420799 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 27067453 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 1098731 | G-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 14931814 | C-T | HOMO | STOP_GAINED | LOC_Os02g25560 |
| SBS | Chr2 | 22628919 | G-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 25222887 | G-A | HET | INTRON | |
| SBS | Chr2 | 33377451 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g54500 |
| SBS | Chr2 | 3763326 | G-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 23284027 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 7345901 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 14374321 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 14374322 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 20525623 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 11296287 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 11296288 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 13536095 | A-G | HET | INTRON | |
| SBS | Chr8 | 15706750 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 19266920 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g31170 |
| SBS | Chr9 | 9002816 | C-T | HET | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1057850 | 1057854 | 4 | |
| Deletion | Chr2 | 2036150 | 2036153 | 3 | |
| Deletion | Chr2 | 4593937 | 4593948 | 11 | |
| Deletion | Chr9 | 10065444 | 10065446 | 2 | |
| Deletion | Chr2 | 11177542 | 11182642 | 5100 | LOC_Os02g19170 |
| Deletion | Chr5 | 11477924 | 11477925 | 1 | |
| Deletion | Chr4 | 12244287 | 12244307 | 20 | |
| Deletion | Chr12 | 12366744 | 12366749 | 5 | |
| Deletion | Chr2 | 13342421 | 13342429 | 8 | LOC_Os02g22360 |
| Deletion | Chr10 | 17398063 | 17398064 | 1 | |
| Deletion | Chr1 | 18374698 | 18374704 | 6 | |
| Deletion | Chr3 | 18867585 | 18867592 | 7 | |
| Deletion | Chr3 | 20898839 | 20898852 | 13 | |
| Deletion | Chr6 | 21182224 | 21182227 | 3 | |
| Deletion | Chr11 | 22536523 | 22536524 | 1 | LOC_Os11g38000 |
| Deletion | Chr1 | 25013321 | 25013326 | 5 | |
| Deletion | Chr12 | 26085003 | 26085032 | 29 | LOC_Os12g42044 |
| Deletion | Chr8 | 26741489 | 26741502 | 13 | |
| Deletion | Chr2 | 29476524 | 29476527 | 3 | |
| Deletion | Chr1 | 39191722 | 39191729 | 7 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 15950134 | 20562403 |
No Translocation