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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37686383	G-T	HET	INTRON
SBS	Chr1	6889628	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g12530
SBS	Chr10	15761109	G-T	HET	INTERGENIC
SBS	Chr10	9442230	C-T	HOMO	INTERGENIC
SBS	Chr11	14928661	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26090
SBS	Chr2	22498078	T-A	HET	INTRON
SBS	Chr2	781544	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g02350
SBS	Chr3	31060302	A-G	HOMO	INTERGENIC
SBS	Chr3	3849656	C-T	HET	INTERGENIC
SBS	Chr3	7488583	T-C	HOMO	INTERGENIC
SBS	Chr4	19045630	C-T	HOMO	INTRON
SBS	Chr4	25353224	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g42840
SBS	Chr4	30800334	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51910
SBS	Chr5	20369899	T-A	HOMO	INTERGENIC
SBS	Chr5	25793312	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44320
SBS	Chr5	9911327	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	20211010	G-A	HOMO	INTERGENIC
SBS	Chr7	18745419	G-T	HOMO	INTERGENIC
SBS	Chr7	8617388	C-A	HET	SYNONYMOUS_CODING
SBS	Chr8	10461830	G-T	HET	INTERGENIC
SBS	Chr8	17498743	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	22333252	A-G	HET	SYNONYMOUS_CODING

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2172650	2172651	1	LOC_Os07g04910
Deletion	Chr11	2642764	2642771	7
Deletion	Chr11	3151179	3151180	1
Deletion	Chr1	4546376	4546777	401	LOC_Os01g09030
Deletion	Chr10	4949335	4963463	14128	3
Deletion	Chr3	6633190	6633206	16
Deletion	Chr11	9010936	9010948	12
Deletion	Chr8	14345826	14345845	19
Deletion	Chr10	14905974	14905975	1
Deletion	Chr2	17293293	17293298	5
Deletion	Chr3	20408212	20408215	3
Deletion	Chr8	20757942	20757946	4
Deletion	Chr10	21667689	21667697	8	LOC_Os10g40460
Deletion	Chr4	24270520	24270529	9
Deletion	Chr8	24474674	24474685	11
Deletion	Chr12	25630446	25630504	58
Deletion	Chr1	31802408	31802412	4
Deletion	Chr2	32042588	32044323	1735	LOC_Os02g52340

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	5090067	5090070	4
Insertion	Chr2	12353499	12353502	4
Insertion	Chr3	12521450	12521450	1
Insertion	Chr6	17986821	17986821	1
Insertion	Chr6	7561931	7561931	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23281707	23602389	LOC_Os07g39400

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4962733	Chr2	6159495	LOC_Os02g11890
Translocation	Chr10	4963446	Chr2	6159483	LOC_Os02g11890
Translocation	Chr8	17545913	Chr4	9596826

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