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| Mutant Information |
|---|
| Mutant Name | FN-113 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-113 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 18
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31414880 | T-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 6887365 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 9287451 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 24237317 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 24926461 | C-T | HET | STOP_GAINED | LOC_Os12g40279 |
| SBS | Chr2 | 8322572 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 14413091 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 28714408 | A-T | HOMO | INTRON | |
| SBS | Chr5 | 24448941 | C-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 10888275 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g19130 |
| SBS | Chr6 | 19846646 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g34090 |
| SBS | Chr6 | 22101503 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 22542022 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr7 | 22690996 | C-A | HET | INTRON | |
| SBS | Chr7 | 9162061 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 1544448 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g03330 |
| SBS | Chr9 | 11437072 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 14788408 | A-T | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 2450586 | 2450593 | 7 | LOC_Os06g05424 |
| Deletion | Chr5 | 2470460 | 2470469 | 9 | |
| Deletion | Chr7 | 2533598 | 2533602 | 4 | |
| Deletion | Chr7 | 2649001 | 3278000 | 629000 | 95 |
| Deletion | Chr3 | 7088279 | 7088299 | 20 | LOC_Os03g13130 |
| Deletion | Chr9 | 8109156 | 8109163 | 7 | |
| Deletion | Chr11 | 9412195 | 9412196 | 1 | |
| Deletion | Chr3 | 10005940 | 10005948 | 8 | |
| Deletion | Chr5 | 17443854 | 17443855 | 1 | LOC_Os05g30130 |
| Deletion | Chr7 | 19026030 | 19026032 | 2 | |
| Deletion | Chr4 | 20417232 | 20417237 | 5 | |
| Deletion | Chr10 | 21963548 | 21963549 | 1 | |
| Deletion | Chr6 | 22101819 | 22101828 | 9 | |
| Deletion | Chr3 | 24167200 | 24176716 | 9516 | 2 |
| Deletion | Chr11 | 24409976 | 24409989 | 13 | |
| Deletion | Chr1 | 26478847 | 26478853 | 6 | |
| Deletion | Chr7 | 28389895 | 28389898 | 3 | |
| Deletion | Chr1 | 32883777 | 32883784 | 7 | |
| Deletion | Chr4 | 33571843 | 33571844 | 1 | |
| Deletion | Chr2 | 34799671 | 34799672 | 1 | LOC_Os02g56760 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 28956138 | 28956138 | 1 | LOC_Os01g50440 |
| Insertion | Chr11 | 10895601 | 10895601 | 1 | |
| Insertion | Chr11 | 12594398 | 12594398 | 1 | |
| Insertion | Chr3 | 32604039 | 32604039 | 1 | |
| Insertion | Chr4 | 16415142 | 16415145 | 4 | |
| Insertion | Chr5 | 21183420 | 21183420 | 1 | |
| Insertion | Chr8 | 19571610 | 19571611 | 2 | |
| Insertion | Chr9 | 18761340 | 18761340 | 1 | LOC_Os09g31200 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 12621028 | Chr10 | 15634211 | 2 |