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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16133800	T-C	HET	INTERGENIC
SBS	Chr1	16133802	C-T	HET	INTERGENIC
SBS	Chr1	26775954	A-T	HET	INTERGENIC
SBS	Chr1	30659865	A-T	HET	INTERGENIC
SBS	Chr1	39238438	T-C	HET	INTERGENIC
SBS	Chr1	9318764	C-T	HET	INTERGENIC
SBS	Chr1	9799102	T-C	HET	INTERGENIC
SBS	Chr10	12213495	G-A	HOMO	INTERGENIC
SBS	Chr10	9797527	C-T	HET	INTRON
SBS	Chr12	21728924	G-C	HET	INTERGENIC
SBS	Chr2	32574300	G-T	HOMO	INTERGENIC
SBS	Chr2	34566539	A-T	HET	INTERGENIC
SBS	Chr3	25175765	T-G	HET	INTERGENIC
SBS	Chr3	34357014	C-T	HET	INTERGENIC
SBS	Chr4	22072944	G-A	HET	INTERGENIC
SBS	Chr4	26032774	A-G	HET	INTRON
SBS	Chr5	16533600	T-C	HET	INTERGENIC
SBS	Chr5	16644272	C-T	HET	INTERGENIC
SBS	Chr5	7247048	G-T	HET	INTERGENIC
SBS	Chr5	9499772	C-A	HET	INTERGENIC
SBS	Chr6	10116772	C-A	HET	INTERGENIC
SBS	Chr6	2751666	G-A	HET	INTRON
SBS	Chr6	695248	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g02220
SBS	Chr6	754378	G-A	HOMO	INTERGENIC
SBS	Chr7	17505771	T-C	HET	INTRON
SBS	Chr7	18493664	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g31240
SBS	Chr7	25970480	C-T	HET	INTERGENIC
SBS	Chr7	4470366	C-A	HET	INTERGENIC
SBS	Chr7	6486497	G-C	HOMO	INTERGENIC
SBS	Chr7	7729474	G-T	HET	INTRON
SBS	Chr8	13132772	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g21920
SBS	Chr8	14319764	C-T	HOMO	INTRON
SBS	Chr8	1816990	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	2423239	C-A	HOMO	INTERGENIC
SBS	Chr8	26567498	T-A	HOMO	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1739254	1739257	3	LOC_Os01g04010
Deletion	Chr12	10135148	10135154	6
Deletion	Chr12	10177650	10177651	1	LOC_Os12g17780
Deletion	Chr3	11351466	11351471	5	LOC_Os03g20100
Deletion	Chr1	11352650	11352652	2
Deletion	Chr8	11869094	11869103	9
Deletion	Chr7	13088528	13088537	9	LOC_Os07g23220
Deletion	Chr10	13591665	13591666	1
Deletion	Chr6	14415152	14415161	9
Deletion	Chr8	16683258	16683266	8
Deletion	Chr11	17562833	17562846	13	LOC_Os11g30210
Deletion	Chr10	18823050	18823052	2
Deletion	Chr5	19584372	19584380	8
Deletion	Chr11	20242096	20242097	1
Deletion	Chr2	21124114	21124121	7	LOC_Os02g35170
Deletion	Chr3	23076347	23076494	147
Deletion	Chr12	24244670	24244681	11
Deletion	Chr2	25266582	25266599	17
Deletion	Chr4	26254354	26254359	5
Deletion	Chr6	27882512	27882521	9

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	1756637	1756637	1
Insertion	Chr2	25476436	25476436	1
Insertion	Chr5	28034317	28034317	1
Insertion	Chr7	15512354	15512354	1
Insertion	Chr7	2287426	2287427	2	LOC_Os07g05160
Insertion	Chr9	6634820	6634820	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr10	19025733	19083868
Inversion	Chr4	29127316	29355166
Inversion	Chr4	29127373	29355173

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	13972552	Chr4	7757810	LOC_Os05g24190
Translocation	Chr8	17261022	Chr6	13847743

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