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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14246096	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g25210
SBS	Chr1	24375631	T-C	HET	INTERGENIC
SBS	Chr1	24844740	C-T	HET	INTRON
SBS	Chr1	25964439	G-A	HET	INTERGENIC
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr1	41199212	T-A	HOMO	INTERGENIC
SBS	Chr1	41845456	C-A	HET	UTR_3_PRIME
SBS	Chr1	42287692	C-A	HET	INTERGENIC
SBS	Chr10	10269288	C-T	HOMO	INTERGENIC
SBS	Chr10	10305316	C-T	HOMO	INTERGENIC
SBS	Chr11	12978609	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22570
SBS	Chr11	6226827	A-T	HET	INTERGENIC
SBS	Chr12	16440150	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g27880
SBS	Chr2	17481969	G-A	HET	INTERGENIC
SBS	Chr3	17954274	G-T	HET	INTERGENIC
SBS	Chr3	23921279	A-G	HOMO	INTERGENIC
SBS	Chr3	31187547	T-G	HOMO	INTRON
SBS	Chr3	33465861	A-T	HOMO	INTERGENIC
SBS	Chr3	4487613	T-C	HOMO	INTRON
SBS	Chr4	11684108	A-T	HET	INTRON
SBS	Chr4	1351102	C-A	HOMO	INTERGENIC
SBS	Chr4	19809727	A-G	HET	INTERGENIC
SBS	Chr4	24429411	C-T	HET	INTERGENIC
SBS	Chr4	3298721	A-C	HET	INTRON
SBS	Chr5	21351356	C-T	HET	INTERGENIC
SBS	Chr6	24377401	G-A	HOMO	INTERGENIC
SBS	Chr7	177475	C-T	HET	INTERGENIC
SBS	Chr7	20336013	A-G	HET	INTERGENIC
SBS	Chr8	18063115	C-T	HET	INTRON
SBS	Chr8	27746761	C-T	HOMO	INTERGENIC
SBS	Chr8	4496565	C-A	HOMO	INTERGENIC
SBS	Chr9	12892754	G-T	HOMO	INTERGENIC
SBS	Chr9	22906575	A-G	HET	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3596397	3596399	2	LOC_Os10g06910
Deletion	Chr8	4491708	4491710	2
Deletion	Chr2	4657543	4657544	1
Deletion	Chr4	19488433	19488441	8
Deletion	Chr1	24956784	25014094	57310	7
Deletion	Chr1	25026817	25026818	1	LOC_Os01g43670
Deletion	Chr4	25634510	25634513	3
Deletion	Chr2	27089880	27089881	1
Deletion	Chr3	28454457	28454458	1
Deletion	Chr1	30298741	30298744	3
Deletion	Chr1	41209597	41209598	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	24179472	24179473	2
Insertion	Chr3	15899900	15899901	2
Insertion	Chr4	312993	312994	2
Insertion	Chr6	3117210	3117210	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	10465783	11791822	LOC_Os05g20150
Inversion	Chr5	11791820	17616206	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17554971	Chr1	10829049
Translocation	Chr9	17557328	Chr1	10829129	LOC_Os09g28890

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