Search Nipponbare

Mutant Information

Mutant Name	FN-116 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-116 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14927163	T-A	HET	INTRON
SBS	Chr1	23876557	G-A	HET	INTERGENIC
SBS	Chr1	30556999	C-T	HOMO	INTRON
SBS	Chr1	43193682	C-T	HET	INTERGENIC
SBS	Chr10	17685762	C-A	HET	INTERGENIC
SBS	Chr11	10378174	G-A	HOMO	INTERGENIC
SBS	Chr12	5183125	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g09780
SBS	Chr3	23667437	G-A	HET	STOP_GAINED	LOC_Os03g42530
SBS	Chr3	24899797	G-A	HET	INTERGENIC
SBS	Chr3	34037465	G-T	HET	INTERGENIC
SBS	Chr5	18861328	A-G	HOMO	INTERGENIC
SBS	Chr8	27939591	C-T	HET	INTRON
SBS	Chr9	5844562	T-A	HET	INTERGENIC
SBS	Chr9	7323076	G-T	HET	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1320828	1320832	4
Deletion	Chr11	7649291	7649296	5	LOC_Os11g13860
Deletion	Chr9	11924207	11924212	5
Deletion	Chr6	17673586	17673590	4
Deletion	Chr10	17953766	17953769	3
Deletion	Chr5	20164638	20164641	3
Deletion	Chr9	21152341	21152348	7
Deletion	Chr6	28358714	28358716	2
Deletion	Chr4	30064199	30064221	22	LOC_Os04g50820
Deletion	Chr3	34732582	34732590	8
Deletion	Chr1	35138187	35138188	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	23752413	23752413	1
Insertion	Chr6	21372446	21372451	6	LOC_Os06g36390

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6348920	10914661	LOC_Os01g19290
Inversion	Chr4	9577503	9629202

No Translocation