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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12748987	T-A	HET	INTERGENIC
SBS	Chr1	13985196	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g24830
SBS	Chr1	17847249	A-T	HET	INTRON
SBS	Chr1	40472121	C-A	HOMO	INTERGENIC
SBS	Chr10	21101407	C-T	HOMO	INTERGENIC
SBS	Chr11	15371721	C-T	HET	INTERGENIC
SBS	Chr12	5691925	G-A	HOMO	INTERGENIC
SBS	Chr2	20147117	G-A	HET	INTERGENIC
SBS	Chr2	33168769	A-T	HET	INTRON
SBS	Chr2	33168770	A-T	HET	INTRON
SBS	Chr3	31900522	G-A	HET	INTERGENIC
SBS	Chr4	10429411	G-C	HET	INTERGENIC
SBS	Chr4	14642560	G-A	HOMO	INTERGENIC
SBS	Chr4	27261419	C-T	HOMO	INTRON
SBS	Chr5	10430129	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	5799478	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	21172617	A-C	HET	INTERGENIC
SBS	Chr7	10674140	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g18030
SBS	Chr7	21219739	C-A	HOMO	INTERGENIC
SBS	Chr8	7853624	C-A	HET	INTERGENIC
SBS	Chr9	11639168	C-G	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	6983199	6983210	11
Deletion	Chr3	9972649	9972995	346	LOC_Os03g17900
Deletion	Chr12	10703131	10703134	3
Deletion	Chr4	11382858	11382859	1	LOC_Os04g20340
Deletion	Chr9	11959828	11959832	4
Deletion	Chr11	14565397	14565599	202
Deletion	Chr8	17767328	17767337	9	LOC_Os08g29020
Deletion	Chr6	18089306	18089309	3
Deletion	Chr12	19487424	19487426	2
Deletion	Chr1	20656284	20656287	3
Deletion	Chr4	20685869	20685873	4
Deletion	Chr2	21381277	21381287	10
Deletion	Chr7	21742080	21742082	2
Deletion	Chr6	23087523	23087528	5
Deletion	Chr6	23095093	23095138	45	LOC_Os06g38930
Deletion	Chr12	23909752	23909755	3
Deletion	Chr2	24063952	24063965	13
Deletion	Chr3	25788077	25788087	10
Deletion	Chr4	28581349	28581408	59

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	16367368	16367369	2
Insertion	Chr6	4915080	4915080	1
Insertion	Chr6	5427904	5427904	1
Insertion	Chr7	13017447	13017447	1
Insertion	Chr7	28173836	28173836	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	15461328	15483742	LOC_Os02g26370

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4813987	Chr3	9972653	2
Translocation	Chr3	9585679	Chr1	4749093
Translocation	Chr3	9593506	Chr1	4749113	LOC_Os03g17210

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