Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-119 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-119 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16704052 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 20629459 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g36970 |
| SBS | Chr1 | 33091569 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 15710554 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 5974006 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 8511309 | C-G | HET | INTERGENIC | |
| SBS | Chr2 | 19312103 | C-A | HET | INTRON | |
| SBS | Chr2 | 19312104 | A-T | HET | INTRON | |
| SBS | Chr2 | 2646661 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 28478368 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 3580859 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 19968340 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 20546247 | G-T | HET | INTRON | |
| SBS | Chr3 | 31473090 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g55320 |
| SBS | Chr4 | 19195221 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 5475218 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 21277643 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 24157070 | A-T | HET | INTRON | |
| SBS | Chr5 | 24802014 | G-T | HET | INTERGENIC | |
| SBS | Chr6 | 26713816 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr6 | 26713817 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr6 | 5707328 | A-G | HOMO | INTRON | |
| SBS | Chr7 | 10801274 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 11145735 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 19170691 | G-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 12500304 | A-G | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 195030 | 195033 | 3 | |
| Deletion | Chr4 | 791926 | 791927 | 1 | |
| Deletion | Chr4 | 1631469 | 1631650 | 181 | |
| Deletion | Chr8 | 3200650 | 3200654 | 4 | LOC_Os08g05930 |
| Deletion | Chr6 | 4191274 | 4191276 | 2 | |
| Deletion | Chr1 | 4973628 | 4973629 | 1 | |
| Deletion | Chr2 | 5066872 | 5066886 | 14 | |
| Deletion | Chr1 | 8064237 | 8064238 | 1 | |
| Deletion | Chr1 | 9281023 | 9281034 | 11 | |
| Deletion | Chr2 | 10112494 | 10112500 | 6 | |
| Deletion | Chr7 | 10991806 | 10991818 | 12 | |
| Deletion | Chr3 | 13227777 | 13227799 | 22 | |
| Deletion | Chr3 | 15860185 | 15860186 | 1 | |
| Deletion | Chr7 | 16801570 | 16801586 | 16 | |
| Deletion | Chr5 | 22069493 | 22069496 | 3 | LOC_Os05g37700 |
| Deletion | Chr6 | 26196135 | 26196136 | 1 | |
| Deletion | Chr8 | 26578701 | 26578704 | 3 | |
| Deletion | Chr4 | 28158879 | 28158901 | 22 | |
| Deletion | Chr1 | 33290323 | 33290877 | 554 | |
| Deletion | Chr4 | 34293109 | 34293127 | 18 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 1933847 | 1933847 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 2381908 | 4150947 | LOC_Os11g07980 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 22701568 | Chr2 | 19269613 | LOC_Os11g38330 |