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Mutant Information |
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Mutant Name | FN-12 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-12 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 8
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr2 | 1621900 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g03840 |
SBS | Chr2 | 10756605 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 19921411 | G-A | Homo | INTERGENIC | |
SBS | Chr3 | 21657537 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g38970 |
SBS | Chr8 | 15322495 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g25220 |
SBS | Chr8 | 26711104 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g42310 |
SBS | Chr9 | 21559748 | T-C | Homo | INTRON | |
SBS | Chr10 | 4533516 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g08360 |
Deletions: 26
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 2739001 | 3959000 | 1220000 | 184 |
Deletion | Chr7 | 4345958 | 4345959 | 1 | |
Deletion | Chr1 | 6837374 | 6837388 | 14 | |
Deletion | Chr7 | 7126395 | 7126406 | 11 | LOC_Os07g12490 |
Deletion | Chr12 | 7274185 | 7274190 | 5 | |
Deletion | Chr5 | 7454774 | 7454797 | 23 | |
Deletion | Chr8 | 7518433 | 7518445 | 12 | |
Deletion | Chr8 | 8635121 | 8635122 | 1 | |
Deletion | Chr9 | 9166945 | 9166958 | 13 | |
Deletion | Chr2 | 10505653 | 10505658 | 5 | LOC_Os02g18080 |
Deletion | Chr10 | 12012092 | 12012108 | 16 | |
Deletion | Chr3 | 12018148 | 12018149 | 1 | |
Deletion | Chr5 | 14124298 | 14124300 | 2 | |
Deletion | Chr8 | 14926818 | 14926830 | 12 | |
Deletion | Chr2 | 16357582 | 16357592 | 10 | |
Deletion | Chr4 | 16979885 | 16979902 | 17 | LOC_Os04g28660 |
Deletion | Chr3 | 17706955 | 17706962 | 7 | |
Deletion | Chr4 | 18032151 | 18032158 | 7 | LOC_Os04g30220 |
Deletion | Chr12 | 23286373 | 23286844 | 471 | |
Deletion | Chr4 | 23852555 | 23852591 | 36 | LOC_Os04g40060 |
Deletion | Chr7 | 25385545 | 25385566 | 21 | LOC_Os07g42410 |
Deletion | Chr2 | 25723099 | 25723104 | 5 | |
Deletion | Chr11 | 28940001 | 28965000 | 25000 | 6 |
Deletion | Chr5 | 29170081 | 29170085 | 4 | |
Deletion | Chr5 | 29791877 | 29791891 | 14 | LOC_Os05g51910 |
Deletion | Chr4 | 32205928 | 32205945 | 17 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr5 | 5287873 | 5287873 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr11 | 12612905 | 13638199 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 27344060 | Chr11 | 28939299 | 2 |