Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	4533516	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g08360
SBS	Chr2	10756605	C-T	HET	INTERGENIC
SBS	Chr2	1621900	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g03840
SBS	Chr3	19921411	G-A	Homo	INTERGENIC
SBS	Chr3	21657537	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g38970
SBS	Chr8	15322495	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g25220
SBS	Chr8	26711104	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g42310
SBS	Chr9	21559748	T-C	Homo	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2739001	3959000	1220000	184
Deletion	Chr7	4345958	4345959	1
Deletion	Chr1	6837374	6837388	14
Deletion	Chr7	7126395	7126406	11	LOC_Os07g12490
Deletion	Chr12	7274185	7274190	5
Deletion	Chr5	7454774	7454797	23
Deletion	Chr8	7518433	7518445	12
Deletion	Chr8	8635121	8635122	1
Deletion	Chr9	9166945	9166958	13
Deletion	Chr2	10505653	10505658	5	LOC_Os02g18080
Deletion	Chr10	12012092	12012108	16
Deletion	Chr3	12018148	12018149	1
Deletion	Chr5	14124298	14124300	2
Deletion	Chr8	14926818	14926830	12
Deletion	Chr2	16357582	16357592	10
Deletion	Chr4	16979885	16979902	17	LOC_Os04g28660
Deletion	Chr3	17706955	17706962	7
Deletion	Chr4	18032151	18032158	7	LOC_Os04g30220
Deletion	Chr12	23286373	23286844	471
Deletion	Chr4	23852555	23852591	36	LOC_Os04g40060
Deletion	Chr7	25385545	25385566	21	LOC_Os07g42410
Deletion	Chr2	25723099	25723104	5
Deletion	Chr11	28940001	28965000	25000	6
Deletion	Chr5	29170081	29170085	4
Deletion	Chr5	29791877	29791891	14	LOC_Os05g51910
Deletion	Chr4	32205928	32205945	17

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	5287873	5287873	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	12612905	13638199

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	27344060	Chr11	28939299	2

Main menu