Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-120 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-120 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 36639161 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 41811625 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 12781912 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 18509719 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 5486005 | T-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 11393337 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 14554936 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 16669453 | T-C | HOMO | INTRON | |
| SBS | Chr12 | 6696017 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 4127459 | T-A | HET | UTR_3_PRIME | |
| SBS | Chr3 | 19117600 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 26358160 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 27372970 | T-G | HET | INTERGENIC | |
| SBS | Chr4 | 12122074 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 15972612 | T-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 2121252 | T-A | HET | INTRON | |
| SBS | Chr4 | 8285607 | A-G | HOMO | INTERGENIC | |
| SBS | Chr5 | 11867558 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 11937331 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g20360 |
| SBS | Chr5 | 20448423 | T-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 10966584 | G-T | HET | INTERGENIC | |
| SBS | Chr6 | 27766278 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 9646634 | T-C | HET | INTRON | |
| SBS | Chr7 | 14026266 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 18334445 | T-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 2372309 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 26377013 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 21069534 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 6892164 | A-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 9259486 | G-A | HET | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 208343 | 208354 | 11 | |
| Deletion | Chr2 | 1023061 | 1023062 | 1 | |
| Deletion | Chr5 | 4847586 | 4847598 | 12 | |
| Deletion | Chr12 | 5738742 | 5738754 | 12 | LOC_Os12g10700 |
| Deletion | Chr6 | 9407758 | 9407766 | 8 | LOC_Os06g16430 |
| Deletion | Chr7 | 12465336 | 12465407 | 71 | |
| Deletion | Chr9 | 14339779 | 14339780 | 1 | |
| Deletion | Chr3 | 14592135 | 14592142 | 7 | |
| Deletion | Chr8 | 15633091 | 15633092 | 1 | |
| Deletion | Chr7 | 16153286 | 16153293 | 7 | LOC_Os07g27690 |
| Deletion | Chr12 | 16650782 | 16650787 | 5 | LOC_Os12g28200 |
| Deletion | Chr10 | 19880077 | 19880078 | 1 | |
| Deletion | Chr4 | 20574010 | 20574011 | 1 | |
| Deletion | Chr2 | 27531216 | 27531220 | 4 | LOC_Os02g45310 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 17346736 | 17346736 | 1 | |
| Insertion | Chr5 | 2567681 | 2567682 | 2 | |
| Insertion | Chr9 | 6032227 | 6032227 | 1 |
No Inversion
No Translocation