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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13288697	A-G	HOMO	INTERGENIC
SBS	Chr1	41888174	A-C	HET	INTRON
SBS	Chr10	14080600	C-T	HET	INTRON
SBS	Chr10	16841876	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32060
SBS	Chr10	18668333	C-G	HET	INTRON
SBS	Chr10	8228602	T-G	HET	INTERGENIC
SBS	Chr11	18887432	A-G	HET	INTRON
SBS	Chr11	28934545	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47970
SBS	Chr11	28934546	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47970
SBS	Chr11	6248706	C-A	HET	INTRON
SBS	Chr11	6248736	G-A	HET	INTRON
SBS	Chr11	6871988	T-C	HOMO	INTERGENIC
SBS	Chr11	6871995	T-C	HOMO	INTERGENIC
SBS	Chr12	14391264	G-A	HOMO	INTERGENIC
SBS	Chr12	20810068	C-T	HET	INTRON
SBS	Chr2	1158391	G-A	HOMO	INTERGENIC
SBS	Chr2	2686209	T-A	HET	INTERGENIC
SBS	Chr2	29473295	C-T	HOMO	INTERGENIC
SBS	Chr2	30851755	G-T	HET	INTERGENIC
SBS	Chr2	32373333	A-C	HOMO	INTRON
SBS	Chr2	6136942	A-G	HET	INTRON
SBS	Chr2	7888475	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g14370
SBS	Chr3	21426818	C-T	HOMO	INTERGENIC
SBS	Chr3	32111876	G-A	HET	INTERGENIC
SBS	Chr3	7242617	T-A	HOMO	INTERGENIC
SBS	Chr5	21310048	T-C	HET	INTERGENIC
SBS	Chr5	2165124	A-G	HOMO	UTR_5_PRIME
SBS	Chr5	5443790	A-T	HOMO	INTRON
SBS	Chr6	17681507	A-T	HET	STOP_GAINED	LOC_Os06g30560
SBS	Chr6	28975124	T-C	HET	INTERGENIC
SBS	Chr7	18054476	T-C	HET	INTERGENIC
SBS	Chr8	16935086	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g27800
SBS	Chr9	18873283	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g31390

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2360186	2360194	8	LOC_Os06g05240
Deletion	Chr2	2405868	2405877	9
Deletion	Chr11	6871981	6871982	1
Deletion	Chr1	7980001	8177000	197000	34
Deletion	Chr11	8119974	8121702	1728	LOC_Os11g14460
Deletion	Chr3	9220134	9220144	10
Deletion	Chr10	9284922	9284933	11
Deletion	Chr4	9428313	9428338	25
Deletion	Chr3	12094166	12094167	1
Deletion	Chr3	15144476	15144477	1
Deletion	Chr3	16653261	16653262	1
Deletion	Chr1	16917487	16917492	5
Deletion	Chr5	18483798	18483799	1
Deletion	Chr7	22570266	22570272	6
Deletion	Chr3	26515712	26515714	2
Deletion	Chr5	26545623	26545625	2
Deletion	Chr8	26892459	26892497	38	LOC_Os08g42550
Deletion	Chr7	28566829	28568369	1540	LOC_Os07g47840
Deletion	Chr1	28777133	28777150	17
Deletion	Chr2	29173512	29173513	1	LOC_Os02g47720
Deletion	Chr5	29395001	29487000	92000	16
Deletion	Chr4	30244377	30251535	7158	2
Deletion	Chr3	32733895	32733919	24
Deletion	Chr3	35358322	35358325	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	31696031	31696031	1
Insertion	Chr2	590485	590485	1
Insertion	Chr6	20888479	20888480	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	12208057	13129719	LOC_Os03g22730
Inversion	Chr11	28760023	28873909

No Translocation

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