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| Mutant Information |
|---|
| Mutant Name | FN-122 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-122 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31000276 | C-G | HET | INTERGENIC | |
| SBS | Chr1 | 31000839 | G-C | HET | INTERGENIC | |
| SBS | Chr1 | 9853058 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 13720634 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 17434288 | T-A | HOMO | UTR_3_PRIME | |
| SBS | Chr11 | 16492728 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 16661183 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 15624151 | G-T | HET | INTRON | |
| SBS | Chr2 | 32996665 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 10321003 | T-A | HET | INTRON | |
| SBS | Chr3 | 11862394 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 19901204 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g32940 |
| SBS | Chr6 | 11052261 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g19400 |
| SBS | Chr6 | 15198267 | A-C | HET | INTERGENIC | |
| SBS | Chr6 | 16052319 | C-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 7813591 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 7813593 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 27659755 | T-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 6586928 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 13177909 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g21760 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 1835001 | 1870000 | 35000 | 5 |
| Deletion | Chr11 | 4618554 | 4618557 | 3 | |
| Deletion | Chr4 | 5674208 | 5674228 | 20 | |
| Deletion | Chr3 | 6455947 | 6455948 | 1 | |
| Deletion | Chr3 | 10194272 | 10194281 | 9 | |
| Deletion | Chr10 | 16832743 | 16832744 | 1 | |
| Deletion | Chr7 | 23439474 | 23439513 | 39 | |
| Deletion | Chr12 | 25973729 | 25973730 | 1 | |
| Deletion | Chr8 | 26928260 | 26928269 | 9 | LOC_Os08g42600 |
| Deletion | Chr7 | 27141405 | 27141408 | 3 | LOC_Os07g45490 |
| Deletion | Chr5 | 29552125 | 29552126 | 1 | |
| Deletion | Chr1 | 30456419 | 30456420 | 1 | |
| Deletion | Chr1 | 30733791 | 30733807 | 16 | |
| Deletion | Chr1 | 31002336 | 31002384 | 48 | |
| Deletion | Chr4 | 31494560 | 31494562 | 2 | |
| Deletion | Chr4 | 31540588 | 31540589 | 1 | |
| Deletion | Chr1 | 42350842 | 42350845 | 3 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 19503467 | 19503467 | 1 | |
| Insertion | Chr6 | 9464981 | 9464987 | 7 |
No Inversion
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 7374019 | Chr4 | 1835098 | |
| Translocation | Chr6 | 7436458 | Chr4 | 1870044 | LOC_Os04g04030 |
| Translocation | Chr4 | 20194688 | Chr1 | 20532336 |