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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12639072	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g22480
SBS	Chr1	15922397	G-C	HOMO	INTERGENIC
SBS	Chr1	29339548	G-T	HOMO	INTERGENIC
SBS	Chr1	42612689	A-T	HOMO	INTERGENIC
SBS	Chr1	4576223	G-A	HOMO	INTERGENIC
SBS	Chr11	11535853	T-A	HET	INTERGENIC
SBS	Chr11	14183016	G-A	HET	INTERGENIC
SBS	Chr12	11111166	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19140
SBS	Chr12	7585280	T-C	HET	INTERGENIC
SBS	Chr12	9773084	C-T	HET	INTERGENIC
SBS	Chr2	28723159	T-A	HET	INTERGENIC
SBS	Chr2	28723160	T-A	HET	INTERGENIC
SBS	Chr3	24124042	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	26078416	C-A	HOMO	INTERGENIC
SBS	Chr3	28613189	G-A	HET	INTERGENIC
SBS	Chr4	30309192	C-T	HET	INTERGENIC
SBS	Chr4	30636172	T-C	HOMO	INTRON
SBS	Chr4	5019737	C-T	HOMO	INTERGENIC
SBS	Chr5	11162482	T-A	HET	INTRON
SBS	Chr5	25921256	A-G	HET	INTRON
SBS	Chr6	21236882	T-C	HET	INTERGENIC
SBS	Chr6	24803274	A-G	HET	INTERGENIC
SBS	Chr6	28126874	C-T	HOMO	INTERGENIC
SBS	Chr7	22651745	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g37760
SBS	Chr7	23909274	T-G	HOMO	INTERGENIC
SBS	Chr7	25940433	C-T	HET	INTERGENIC
SBS	Chr8	11315026	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18970
SBS	Chr9	13363771	C-T	HET	INTERGENIC
SBS	Chr9	1655843	T-C	HET	INTERGENIC
SBS	Chr9	20900883	A-G	HOMO	INTRON
SBS	Chr9	3796667	A-G	HET	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	130307	130308	1
Deletion	Chr6	1149886	1149887	1
Deletion	Chr6	2441573	2441579	6
Deletion	Chr7	9048003	9048004	1
Deletion	Chr6	9103808	9103810	2
Deletion	Chr6	9671616	9671627	11
Deletion	Chr12	10177978	10178836	858	LOC_Os12g17780
Deletion	Chr8	22771764	22771765	1
Deletion	Chr3	22780048	22780064	16
Deletion	Chr3	25815431	25824995	9564	LOC_Os03g45734
Deletion	Chr3	27367245	27367251	6
Deletion	Chr1	28434185	28434740	555

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	42612693	42612693	1
Insertion	Chr8	22800889	22800889	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13821637	13851145	LOC_Os10g26570
Inversion	Chr7	19759065	19865721

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	19759128	Chr2	35892247
Translocation	Chr2	28722951	Chr1	28434192

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