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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	979145	A-T	HET	INTRON
SBS	Chr1	1242045	C-G	HET	SYNONYMOUS_CODING
SBS	Chr1	3986435	T-C	HET	INTERGENIC
SBS	Chr1	7826180	A-G	HOMO	INTRON
SBS	Chr2	29448641	T-C	HET	INTRON
SBS	Chr2	31052290	A-T	HET	INTERGENIC
SBS	Chr2	32470692	G-T	HET	SYNONYMOUS_CODING
SBS	Chr3	445037	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g01710
SBS	Chr3	19046591	G-T	HET	INTRON
SBS	Chr3	30566472	T-C	HET	INTRON
SBS	Chr4	10616048	C-T	HET	INTRON
SBS	Chr4	20931608	C-T	HET	INTERGENIC
SBS	Chr5	20655418	G-C	HET	INTERGENIC
SBS	Chr5	21921954	A-G	HOMO	INTERGENIC
SBS	Chr6	6959951	C-T	HET	INTERGENIC
SBS	Chr6	14002408	C-T	HET	INTERGENIC
SBS	Chr6	15636984	T-A	HET	INTERGENIC
SBS	Chr7	19699979	C-A	HOMO	INTERGENIC
SBS	Chr7	24641655	A-T	HOMO	INTERGENIC
SBS	Chr8	21520531	G-T	HOMO	INTERGENIC
SBS	Chr8	25975678	G-A	HOMO	UTR_3_PRIME
SBS	Chr8	26981312	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g42680
SBS	Chr9	5709653	G-C	HOMO	INTERGENIC
SBS	Chr9	7388846	C-G	HOMO	INTERGENIC
SBS	Chr10	21481690	A-C	HET	INTRON
SBS	Chr12	800310	C-T	HOMO	INTERGENIC

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	3487194	3487200	6
Deletion	Chr7	8264600	8264602	2
Deletion	Chr8	16219446	16219468	22	LOC_Os08g26685
Deletion	Chr3	25343668	25343669	1
Deletion	Chr2	32113127	32113130	3
Deletion	Chr3	34831692	34831694	2	LOC_Os03g61370

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	4694155	4694156	2
Insertion	Chr1	42852503	42852508	6
Insertion	Chr6	30840310	30840310	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1624210	2696770
Inversion	Chr3	16294433	19529845	2
Inversion	Chr3	29545412	29569719	LOC_Os03g51620
Inversion	Chr3	29545423	29569719	LOC_Os03g51620

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	21372082	Chr3	15834158	LOC_Os05g36070

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