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| Mutant Information |
|---|
| Mutant Name | FN-125 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-125 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1433895 | T-C | HET | INTRON | |
| SBS | Chr10 | 18512613 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 20938255 | T-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 5099667 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 10915341 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 14072525 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24600 |
| SBS | Chr12 | 18270768 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 19534080 | A-T | HET | INTRON | |
| SBS | Chr12 | 25408346 | G-A | HET | INTRON | |
| SBS | Chr12 | 26806715 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 17065475 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 27547848 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 23938999 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 10267240 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 16239056 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 3435206 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 7453152 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 16823315 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 8935951 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr5 | 8935955 | T-C | HET | UTR_5_PRIME | |
| SBS | Chr6 | 21588246 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 16199180 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 24580127 | C-T | HET | INTERGENIC |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 225143 | 225144 | 1 | |
| Deletion | Chr5 | 2142001 | 2155000 | 13000 | LOC_Os05g04584 |
| Deletion | Chr5 | 2446182 | 2446183 | 1 | |
| Deletion | Chr4 | 2998032 | 2998040 | 8 | |
| Deletion | Chr5 | 10279871 | 10279872 | 1 | LOC_Os05g17880 |
| Deletion | Chr6 | 10433787 | 10433790 | 3 | |
| Deletion | Chr5 | 12242674 | 12242679 | 5 | |
| Deletion | Chr9 | 16239838 | 16239839 | 1 | |
| Deletion | Chr5 | 17158010 | 17158217 | 207 | LOC_Os05g29690 |
| Deletion | Chr12 | 17935001 | 17993000 | 58000 | 4 |
| Deletion | Chr8 | 18413508 | 18413509 | 1 | |
| Deletion | Chr3 | 18801729 | 18801731 | 2 | |
| Deletion | Chr10 | 18986431 | 18986501 | 70 | |
| Deletion | Chr10 | 19044922 | 19044940 | 18 | LOC_Os10g35604 |
| Deletion | Chr12 | 19875785 | 19875810 | 25 | |
| Deletion | Chr6 | 22665851 | 22665871 | 20 | |
| Deletion | Chr12 | 25296338 | 25296339 | 1 | |
| Deletion | Chr11 | 26478700 | 26478705 | 5 | |
| Deletion | Chr7 | 26747089 | 26754040 | 6951 | |
| Deletion | Chr2 | 27530405 | 27530411 | 6 | |
| Deletion | Chr4 | 27935758 | 27935759 | 1 | |
| Deletion | Chr1 | 30274523 | 30274529 | 6 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 17559288 | 17559288 | 1 | |
| Insertion | Chr2 | 14232906 | 14232906 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 24502374 | 24579765 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 26385512 | Chr10 | 14461385 | |
| Translocation | Chr11 | 26391582 | Chr10 | 14461384 | |
| Translocation | Chr3 | 28999991 | Chr2 | 12854827 | |
| Translocation | Chr3 | 29014394 | Chr2 | 12149645 | |
| Translocation | Chr6 | 30938519 | Chr5 | 2167166 | |
| Translocation | Chr6 | 30938566 | Chr5 | 2155166 | |
| Translocation | Chr3 | 34236267 | Chr2 | 3550161 | LOC_Os03g60190 |