Search Results
| Mutant Information |
|---|
| Mutant Name | FN-126 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-126 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11111937 | T-A | HOMO | INTRON | |
| SBS | Chr1 | 19716907 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g35630 |
| SBS | Chr2 | 33207266 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 4414084 | T-C | HOMO | INTRON | |
| SBS | Chr3 | 15867705 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 14676237 | A-T | HOMO | INTRON | |
| SBS | Chr6 | 6190756 | A-C | HET | INTERGENIC | |
| SBS | Chr6 | 13822768 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 20673434 | A-G | HOMO | UTR_3_PRIME | |
| SBS | Chr6 | 25703354 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 25703355 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 13463032 | T-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g23840 |
| SBS | Chr7 | 14753552 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 16430300 | T-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 13714586 | C-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 9710730 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g15890 |
| SBS | Chr9 | 12413891 | A-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 17473367 | G-A | HOMO | STOP_GAINED | LOC_Os09g28760 |
| SBS | Chr10 | 9204919 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 4106216 | C-G | HET | INTRON |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 3376480 | 3376488 | 8 | |
| Deletion | Chr11 | 4344670 | 4344671 | 1 | |
| Deletion | Chr2 | 5156088 | 5156100 | 12 | LOC_Os02g09930 |
| Deletion | Chr6 | 5842011 | 5842026 | 15 | LOC_Os06g11140 |
| Deletion | Chr12 | 7408593 | 7408594 | 1 | |
| Deletion | Chr3 | 10502318 | 10502322 | 4 | LOC_Os03g18740 |
| Deletion | Chr6 | 10825622 | 10892415 | 66793 | 11 |
| Deletion | Chr4 | 10908364 | 10908379 | 15 | |
| Deletion | Chr11 | 15173396 | 15173408 | 12 | |
| Deletion | Chr9 | 15260241 | 15260251 | 10 | |
| Deletion | Chr11 | 15378142 | 15378156 | 14 | |
| Deletion | Chr1 | 19716824 | 19716828 | 4 | |
| Deletion | Chr11 | 20091038 | 20091041 | 3 | |
| Deletion | Chr12 | 20190439 | 20190467 | 28 | |
| Deletion | Chr10 | 20400496 | 20400505 | 9 | |
| Deletion | Chr9 | 20866981 | 20866996 | 15 | |
| Deletion | Chr6 | 21962018 | 21962019 | 1 | |
| Deletion | Chr7 | 22202428 | 22202603 | 175 | |
| Deletion | Chr2 | 33048030 | 33048032 | 2 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 28124716 | 28124717 | 2 | LOC_Os05g49040 |
| Insertion | Chr7 | 29563869 | 29563872 | 4 | |
| Insertion | Chr1 | 29200944 | 29200944 | 1 | |
| Insertion | Chr10 | 19725372 | 19725372 | 1 | |
| Insertion | Chr3 | 12329455 | 12329455 | 1 | |
| Insertion | Chr5 | 29335655 | 29335655 | 1 |
No Inversion
No Translocation