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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22793612	T-A	HET	INTRON
SBS	Chr1	25242634	G-A	HET	INTERGENIC
SBS	Chr1	30432103	G-A	HOMO	INTERGENIC
SBS	Chr2	1931248	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g04380
SBS	Chr3	20551353	A-T	HOMO	INTERGENIC
SBS	Chr3	24931632	T-C	HOMO	INTRON
SBS	Chr4	634463	A-G	HET	INTERGENIC
SBS	Chr4	3053521	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05900
SBS	Chr4	4515712	T-C	HOMO	INTERGENIC
SBS	Chr4	13564858	G-A	HOMO	INTERGENIC
SBS	Chr4	30984816	C-T	HET	INTERGENIC
SBS	Chr5	1075323	G-T	HOMO	INTERGENIC
SBS	Chr5	7356709	C-T	HET	INTERGENIC
SBS	Chr5	16597412	G-A	HOMO	INTERGENIC
SBS	Chr6	24863246	G-A	HET	INTERGENIC
SBS	Chr6	25334967	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42200
SBS	Chr7	13354246	G-A	HET	UTR_3_PRIME
SBS	Chr8	670877	C-T	HOMO	INTERGENIC
SBS	Chr8	8175586	A-G	HET	INTERGENIC
SBS	Chr8	18340786	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29840
SBS	Chr9	16905094	A-T	HET	INTERGENIC
SBS	Chr10	1293914	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g03080
SBS	Chr10	7458702	G-A	HET	INTRON
SBS	Chr10	9587541	T-G	HET	INTRON
SBS	Chr10	12547619	G-A	HOMO	INTERGENIC
SBS	Chr10	13393427	G-A	HET	INTRON
SBS	Chr11	6457686	C-A	HET	INTERGENIC
SBS	Chr11	9064583	G-A	HET	INTERGENIC
SBS	Chr11	9064584	G-A	HET	INTERGENIC
SBS	Chr11	11564495	T-A	HOMO	INTERGENIC
SBS	Chr11	20838991	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35550
SBS	Chr11	23082538	A-T	HOMO	INTERGENIC
SBS	Chr12	14633079	T-C	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	510742	510752	10	LOC_Os02g01940
Deletion	Chr2	628749	628754	5	LOC_Os02g02120
Deletion	Chr5	823491	823497	6	LOC_Os05g02435
Deletion	Chr10	1293808	1293825	17	LOC_Os10g03080
Deletion	Chr12	1297934	1297960	26
Deletion	Chr10	1860608	1860611	3	LOC_Os10g04050
Deletion	Chr11	2519028	2519033	5	LOC_Os11g05556
Deletion	Chr4	3464791	3464797	6
Deletion	Chr1	3516435	3516436	1
Deletion	Chr11	4863031	4863047	16
Deletion	Chr4	6913808	6913811	3
Deletion	Chr8	7300847	7300857	10
Deletion	Chr3	8046382	8046387	5
Deletion	Chr5	10956291	10956971	680
Deletion	Chr9	14432851	14432852	1
Deletion	Chr9	14910687	14910699	12
Deletion	Chr12	23278625	23278631	6
Deletion	Chr6	27158058	27158059	1
Deletion	Chr4	30301876	30301879	3
Deletion	Chr4	33324434	33324447	13
Deletion	Chr4	33944426	33944440	14
Deletion	Chr1	35492889	35492890	1	LOC_Os01g61350

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	11564497	11564497	1
Insertion	Chr1	2205708	2205711	4
Insertion	Chr4	4167580	4167581	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	16218349	16483406	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	10956300	Chr2	35072216	LOC_Os02g57240
Translocation	Chr5	10956957	Chr2	35072214	LOC_Os02g57240
Translocation	Chr7	23426155	Chr1	3341592	2
Translocation	Chr7	23429347	Chr1	3341588	2

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