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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	15808108	A-T	HET	INTRON
SBS	Chr11	15365814	A-T	HET	INTERGENIC
SBS	Chr2	28851060	T-C	HET	INTERGENIC
SBS	Chr2	29337262	G-A	HOMO	INTRON
SBS	Chr3	27228368	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47902
SBS	Chr3	6882633	C-G	HET	INTERGENIC
SBS	Chr4	17370665	A-G	HET	INTERGENIC
SBS	Chr4	18525528	A-T	HET	INTRON
SBS	Chr4	18525529	A-T	HET	INTRON
SBS	Chr5	12785607	C-G	HOMO	INTERGENIC
SBS	Chr5	24713344	A-T	HOMO	INTRON
SBS	Chr5	6890283	G-T	HET	INTERGENIC
SBS	Chr6	3991822	G-A	HOMO	INTRON
SBS	Chr7	11650779	T-C	HOMO	INTERGENIC
SBS	Chr7	21812254	A-T	HET	INTERGENIC
SBS	Chr8	23986970	A-T	HOMO	INTERGENIC
SBS	Chr9	21968801	C-T	HOMO	INTERGENIC
SBS	Chr9	22699816	A-T	HET	INTERGENIC
SBS	Chr9	3690849	G-A	HET	INTERGENIC
SBS	Chr9	4045418	A-T	HET	UTR_3_PRIME
SBS	Chr9	6478150	G-A	HET	INTRON

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	451681	451690	9
Deletion	Chr11	834130	834138	8
Deletion	Chr12	2186156	2186168	12
Deletion	Chr7	4132776	4132782	6
Deletion	Chr6	4660406	4660425	19
Deletion	Chr11	4677001	4697000	20000	6
Deletion	Chr11	4725001	4815000	90000	13
Deletion	Chr5	15369001	15925000	556000	89
Deletion	Chr6	23133286	23133315	29
Deletion	Chr5	27164608	27164609	1
Deletion	Chr1	28273706	28273715	9

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25775749	25775749	1	LOC_Os01g45430
Insertion	Chr4	13842510	13842510	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1075149	15931234
Inversion	Chr5	1075168	15924571	LOC_Os05g27400
Inversion	Chr3	9624094	10403048	2
Inversion	Chr5	15230226	15931238	LOC_Os05g26170
Inversion	Chr3	28165543	28561468	2

No Translocation

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