Search Results
| Mutant Information |
|---|
| Mutant Name | FN-129 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-129 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3793333 | A-C | HET | INTERGENIC | |
| SBS | Chr1 | 6658299 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 34903880 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g60340 |
| SBS | Chr2 | 20479925 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 30277452 | G-T | HET | INTRON | |
| SBS | Chr4 | 13001965 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 19950274 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 29770891 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 3726858 | A-G | HET | INTRON | |
| SBS | Chr5 | 9534741 | G-C | HET | INTERGENIC | |
| SBS | Chr5 | 9536460 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 17796610 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 29455429 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 1906629 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g04320 |
| SBS | Chr7 | 5103475 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g09610 |
| SBS | Chr7 | 22502743 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 28049587 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 17163793 | G-C | HET | INTERGENIC | |
| SBS | Chr8 | 22289893 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 15247248 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 843619 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 8043445 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 8043446 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 8233157 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 25005644 | G-T | HET | INTRON | |
| SBS | Chr12 | 27207326 | C-A | HET | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 3247519 | 3247527 | 8 | |
| Deletion | Chr6 | 5463514 | 5463515 | 1 | LOC_Os06g10580 |
| Deletion | Chr6 | 6230374 | 6230379 | 5 | |
| Deletion | Chr11 | 6311753 | 6311758 | 5 | |
| Deletion | Chr1 | 8762885 | 8762934 | 49 | LOC_Os01g15600 |
| Deletion | Chr1 | 12118493 | 12118495 | 2 | |
| Deletion | Chr2 | 12634228 | 12634238 | 10 | |
| Deletion | Chr4 | 13113746 | 13113747 | 1 | |
| Deletion | Chr12 | 14187860 | 14187861 | 1 | LOC_Os12g24730 |
| Deletion | Chr5 | 15091038 | 15091040 | 2 | LOC_Os05g25960 |
| Deletion | Chr9 | 19133153 | 19133155 | 2 | |
| Deletion | Chr1 | 26116262 | 26116274 | 12 | |
| Deletion | Chr3 | 26265746 | 26265790 | 44 | LOC_Os03g46440 |
| Deletion | Chr1 | 34290704 | 34290718 | 14 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 26216523 | 26216524 | 2 | |
| Insertion | Chr3 | 14495324 | 14495325 | 2 | |
| Insertion | Chr9 | 10403603 | 10403604 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 3666829 | 4604966 | LOC_Os06g09140 |
| Inversion | Chr8 | 7660747 | 7862321 | LOC_Os08g12890 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 21807060 | Chr9 | 21821480 | LOC_Os11g36960 |
| Translocation | Chr8 | 25711595 | Chr2 | 33974391 |