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Mutant Information

Mutant Name	FN-130 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-130 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27160647	C-G	HET	INTRON
SBS	Chr2	33683611	T-A	HET	INTERGENIC
SBS	Chr3	25151852	C-T	HET	INTERGENIC
SBS	Chr6	601875	C-A	HET	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3247519	3247527	8
Deletion	Chr6	5463514	5463515	1	LOC_Os06g10580
Deletion	Chr6	6230374	6230379	5
Deletion	Chr1	8930730	8930732	2
Deletion	Chr5	11270789	11270795	6	LOC_Os05g19400
Deletion	Chr1	12118493	12118495	2
Deletion	Chr2	12634228	12634238	10
Deletion	Chr4	13113746	13113747	1
Deletion	Chr7	14749946	14749955	9
Deletion	Chr10	16807473	16807477	4	LOC_Os10g31990
Deletion	Chr9	19133153	19133155	2
Deletion	Chr11	19553077	19553092	15	LOC_Os11g33070
Deletion	Chr8	25354081	25354089	8
Deletion	Chr8	25385599	25711595	325996	51
Deletion	Chr1	34290704	34290718	14

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	23521192	23521195	4	LOC_Os12g38320
Insertion	Chr5	19701026	19701029	4
Insertion	Chr1	6872788	6872789	2
Insertion	Chr1	40623955	40623956	2
Insertion	Chr3	14495324	14495325	2
Insertion	Chr3	25256470	25256471	2
Insertion	Chr9	9495466	9495467	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7660747	7862321	LOC_Os08g12890

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	21245871	Chr2	18115100
Translocation	Chr8	25702483	Chr2	33974395
Translocation	Chr8	25711595	Chr2	33974391