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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3393632	G-A	HOMO	INTERGENIC
SBS	Chr1	27172907	T-C	HET	INTRON
SBS	Chr2	4008622	T-A	HOMO	INTERGENIC
SBS	Chr2	31485102	A-T	HOMO	INTERGENIC
SBS	Chr2	31486104	G-A	HOMO	INTERGENIC
SBS	Chr3	487107	C-T	HOMO	INTERGENIC
SBS	Chr3	16395333	G-T	HET	INTERGENIC
SBS	Chr3	18761984	G-A	HET	INTERGENIC
SBS	Chr4	10603754	C-T	HET	INTERGENIC
SBS	Chr4	17467806	T-A	HET	INTERGENIC
SBS	Chr4	23493708	C-T	HET	INTRON
SBS	Chr4	24431819	G-T	HET	UTR_3_PRIME
SBS	Chr4	28850552	T-A	HET	INTRON
SBS	Chr5	7999384	G-A	HET	INTERGENIC
SBS	Chr5	8893317	T-C	HET	INTRON
SBS	Chr5	19020844	G-C	HET	INTERGENIC
SBS	Chr6	7210285	C-A	HOMO	INTRON
SBS	Chr6	7585744	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	30436203	G-A	HOMO	INTRON
SBS	Chr7	470834	C-T	HET	INTERGENIC
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr8	2270085	G-A	HOMO	STOP_GAINED	LOC_Os08g04560
SBS	Chr8	2270355	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g04560
SBS	Chr8	3175854	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g05900
SBS	Chr8	7117293	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12080
SBS	Chr8	8216340	T-A	HET	INTERGENIC
SBS	Chr8	11485261	T-A	HOMO	INTERGENIC
SBS	Chr10	12266152	G-C	HOMO	INTERGENIC
SBS	Chr10	18612203	T-A	HOMO	INTRON
SBS	Chr11	4524213	A-T	HET	INTRON
SBS	Chr11	5794098	A-C	HET	INTERGENIC
SBS	Chr11	13428275	T-A	HET	INTRON
SBS	Chr11	19627479	C-T	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	28001	43000	15000	3
Deletion	Chr3	503544	503545	1
Deletion	Chr5	561250	561252	2	LOC_Os05g01970
Deletion	Chr7	1052789	1052813	24
Deletion	Chr9	4583188	4583191	3
Deletion	Chr10	5216592	5216594	2
Deletion	Chr10	5332001	5488000	156000	21
Deletion	Chr3	6007538	6007539	1
Deletion	Chr11	6215349	6215350	1
Deletion	Chr7	7677001	7719000	42000	7
Deletion	Chr5	7975542	7975575	33
Deletion	Chr4	10649802	10649803	1
Deletion	Chr9	13271099	13271107	8
Deletion	Chr7	14649172	14649189	17
Deletion	Chr2	17694790	17694811	21
Deletion	Chr2	17703668	17703909	241
Deletion	Chr10	17862308	17862322	14
Deletion	Chr8	23699105	23699114	9
Deletion	Chr4	24345793	24345799	6
Deletion	Chr2	29371478	29371482	4
Deletion	Chr4	34457278	34457387	109	LOC_Os04g57870
Deletion	Chr3	34584446	34584469	23

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2900089	2900089	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10917862	11519040	LOC_Os09g17840
Inversion	Chr9	10917873	13899698	LOC_Os09g17840
Inversion	Chr9	11519049	14000853
Inversion	Chr9	13899690	14000840
Inversion	Chr2	29224738	29425644	LOC_Os02g47780

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	15196859	Chr3	34306987
Translocation	Chr9	15197263	Chr3	34306962

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