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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23387307	A-C	HET	INTERGENIC
SBS	Chr1	24209267	T-A	HET	INTERGENIC
SBS	Chr1	24209268	C-A	HET	INTERGENIC
SBS	Chr2	6068901	G-A	HOMO	INTERGENIC
SBS	Chr2	8186011	G-T	HET	INTERGENIC
SBS	Chr2	27859241	C-A	HET	INTERGENIC
SBS	Chr4	6826323	G-T	HOMO	INTERGENIC
SBS	Chr4	10750595	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g19320
SBS	Chr4	11046266	T-C	HOMO	INTERGENIC
SBS	Chr4	12319850	A-G	HOMO	INTERGENIC
SBS	Chr4	23800004	G-A	HET	INTERGENIC
SBS	Chr4	25834734	C-T	HET	UTR_3_PRIME
SBS	Chr4	33699207	A-G	HOMO	INTRON
SBS	Chr5	17479434	G-A	HOMO	INTERGENIC
SBS	Chr6	5434705	G-T	HOMO	INTERGENIC
SBS	Chr6	6791216	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g12510
SBS	Chr6	19378138	T-G	HET	INTERGENIC
SBS	Chr6	22498571	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	3765836	C-T	HET	INTRON
SBS	Chr7	21461588	T-A	HET	INTERGENIC
SBS	Chr7	23402026	G-A	HET	INTERGENIC
SBS	Chr7	23902626	A-G	HET	INTERGENIC
SBS	Chr8	5350265	T-C	HOMO	INTERGENIC
SBS	Chr8	6938556	G-T	HOMO	INTERGENIC
SBS	Chr8	13740633	T-G	HET	UTR_3_PRIME
SBS	Chr9	10049756	G-A	HET	INTERGENIC
SBS	Chr10	4022186	C-T	HET	INTERGENIC
SBS	Chr10	20347630	G-C	HET	INTERGENIC
SBS	Chr11	8269516	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	14623409	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25640
SBS	Chr12	3006092	A-T	HET	INTERGENIC
SBS	Chr12	14304436	A-T	HOMO	INTERGENIC
SBS	Chr12	14672665	C-A	HOMO	INTERGENIC
SBS	Chr12	24604536	G-A	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1750226	1762788	12562	3
Deletion	Chr6	3965096	3965107	11
Deletion	Chr7	4799710	4799711	1
Deletion	Chr7	7037403	7037411	8
Deletion	Chr2	8924001	9135000	211000	26
Deletion	Chr10	9642696	9642703	7
Deletion	Chr9	10024230	10024236	6
Deletion	Chr9	10500328	10500330	2
Deletion	Chr9	11468564	11468571	7
Deletion	Chr9	11468568	11468575	7
Deletion	Chr6	12779532	12779534	2
Deletion	Chr3	13878001	13946000	68000	9
Deletion	Chr11	15500654	15500657	3
Deletion	Chr3	16186000	16186002	2	LOC_Os03g28140
Deletion	Chr2	17948443	17948445	2
Deletion	Chr9	18132477	18132482	5
Deletion	Chr9	21569188	21569201	13
Deletion	Chr4	21853896	21853899	3	LOC_Os04g35860
Deletion	Chr3	23039890	23039891	1
Deletion	Chr6	24380368	24380379	11	LOC_Os06g40880
Deletion	Chr1	28465679	28465698	19
Deletion	Chr1	33817436	33817454	18	LOC_Os01g58520
Deletion	Chr1	39612180	39612185	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2329880	2329881	2
Insertion	Chr8	19154939	19154939	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8392965	9270152	LOC_Os02g16290
Inversion	Chr2	8907308	8922770	LOC_Os02g15790
Inversion	Chr11	10964402	11736841	2
Inversion	Chr11	11563667	11736839	LOC_Os11g20310
Inversion	Chr3	13946017	14188262	LOC_Os03g24460

No Translocation

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