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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15448311	C-A	HET	INTERGENIC
SBS	Chr1	16156299	A-G	HOMO	INTERGENIC
SBS	Chr1	20175919	C-G	HET	INTRON
SBS	Chr1	20918016	G-T	HET	INTERGENIC
SBS	Chr1	21160984	T-A	HOMO	INTRON
SBS	Chr1	24087277	A-T	HET	INTERGENIC
SBS	Chr1	28575831	T-C	HOMO	UTR_3_PRIME
SBS	Chr1	3402195	T-A	HET	INTRON
SBS	Chr1	42584784	G-A	HOMO	INTERGENIC
SBS	Chr10	19021019	C-A	HOMO	INTRON
SBS	Chr10	9278161	A-G	HET	UTR_3_PRIME
SBS	Chr11	13815349	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24250
SBS	Chr11	6519534	G-A	HET	INTERGENIC
SBS	Chr12	17476762	C-G	HET	INTERGENIC
SBS	Chr12	25764482	T-A	HET	INTERGENIC
SBS	Chr12	8384926	G-A	HOMO	INTERGENIC
SBS	Chr2	12881435	C-T	HOMO	INTERGENIC
SBS	Chr2	18292133	T-G	HET	INTRON
SBS	Chr2	18300434	G-T	HET	INTRON
SBS	Chr2	30384095	T-C	HET	INTERGENIC
SBS	Chr2	34205868	C-A	HET	INTERGENIC
SBS	Chr3	15756079	A-T	HOMO	UTR_5_PRIME
SBS	Chr4	5656816	T-C	HET	INTRON
SBS	Chr5	2004108	C-T	HOMO	INTERGENIC
SBS	Chr6	20445665	A-T	HET	INTERGENIC
SBS	Chr6	23200293	C-A	HET	INTERGENIC
SBS	Chr7	29332104	A-G	HET	INTERGENIC
SBS	Chr7	9142160	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g15740
SBS	Chr8	17787542	T-C	HET	INTERGENIC
SBS	Chr9	11724773	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g19610

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3229930	3229931	1	LOC_Os10g06290
Deletion	Chr11	5897003	5897004	1
Deletion	Chr8	7503660	7503661	1
Deletion	Chr7	7632145	7632161	16
Deletion	Chr11	9120832	9120835	3
Deletion	Chr7	15705032	15705042	10	LOC_Os07g27090
Deletion	Chr1	21504486	21504489	3
Deletion	Chr1	25225922	25225924	2
Deletion	Chr3	26630858	26630879	21
Deletion	Chr1	29320999	29321009	10	LOC_Os01g51040
Deletion	Chr3	31742001	31794000	52000	11
Deletion	Chr3	33056846	33056853	7	LOC_Os03g58060

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	3644733	3644734	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3008679	3099029	LOC_Os02g06200
Inversion	Chr2	3008918	3099035	LOC_Os02g06200
Inversion	Chr11	8538744	15587464	LOC_Os11g15150
Inversion	Chr4	18073640	18422848

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr8	8455000	Chr4	18422785
Translocation	Chr7	24493224	Chr2	3008926
Translocation	Chr7	24493264	Chr2	3008681

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