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Mutant Information

Mutant Name	FN-135 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-135 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9278869	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	9278870	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g16354
SBS	Chr1	25608110	C-T	HET	INTERGENIC
SBS	Chr1	26439290	G-A	HET	INTERGENIC
SBS	Chr2	15457883	C-T	HET	INTERGENIC
SBS	Chr3	1020052	G-C	HOMO	UTR_3_PRIME
SBS	Chr3	19644858	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g35430
SBS	Chr4	31932053	A-G	HET	INTERGENIC
SBS	Chr5	10209678	C-T	HET	INTERGENIC
SBS	Chr5	21112759	C-G	HOMO	INTRON
SBS	Chr5	24481900	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g41800
SBS	Chr5	24874612	C-T	HET	INTERGENIC
SBS	Chr6	6393855	G-T	HOMO	INTERGENIC
SBS	Chr8	12614895	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	23336353	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g36900
SBS	Chr10	3615752	C-A	HET	INTERGENIC
SBS	Chr11	28220644	C-T	HOMO	INTRON

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1625089	1625094	5	LOC_Os12g03920
Deletion	Chr9	2013502	2013511	9
Deletion	Chr7	4660739	4660743	4
Deletion	Chr2	5734758	5734762	4
Deletion	Chr10	5911504	5911508	4
Deletion	Chr1	6424322	6424334	12
Deletion	Chr1	6919001	6933000	14000	2
Deletion	Chr11	10419695	10419696	1
Deletion	Chr2	10737694	10737695	1
Deletion	Chr11	11493210	11493218	8
Deletion	Chr6	13233568	13233576	8
Deletion	Chr7	16451001	16483000	32000	5
Deletion	Chr1	19301237	19301248	11
Deletion	Chr6	20413077	20413088	11
Deletion	Chr5	21487202	21487208	6
Deletion	Chr5	25451892	25451893	1
Deletion	Chr6	26059273	26059276	3
Deletion	Chr7	26355679	26355686	7

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	34768945	34768945	1

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	8400435	Chr1	6932837	LOC_Os01g12590
Translocation	Chr5	8400792	Chr1	6919570
Translocation	Chr6	8968029	Chr3	6374264
Translocation	Chr12	15307504	Chr8	27719363	LOC_Os12g26260
Translocation	Chr12	15307770	Chr6	8968000	LOC_Os12g26260
Translocation	Chr12	15309524	Chr6	9799693	LOC_Os06g16900