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| Mutant Information |
|---|
| Mutant Name | FN-136 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-136 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14133100 | T-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g25060 |
| SBS | Chr1 | 38395048 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 15308224 | A-G | HET | INTRON | |
| SBS | Chr11 | 10074400 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 10074404 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 15118727 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 15118728 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 20237325 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g34560 |
| SBS | Chr12 | 22220891 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 24025730 | G-A | HET | INTRON | |
| SBS | Chr2 | 27326682 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 449257 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g01810 |
| SBS | Chr3 | 11436719 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 34741935 | A-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 32463737 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 32463738 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 16794786 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 2034097 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g04420 |
| SBS | Chr5 | 4143227 | A-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 4645027 | A-C | HET | INTRON | |
| SBS | Chr5 | 9308182 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 21125929 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 14356576 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g25130 |
| SBS | Chr7 | 28825616 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 29158586 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 1374240 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 26815958 | A-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 12298494 | T-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 892677 | A-G | HOMO | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 892687 | 892692 | 5 | |
| Deletion | Chr2 | 4056514 | 4056515 | 1 | |
| Deletion | Chr1 | 5741274 | 5741284 | 10 | |
| Deletion | Chr1 | 9766052 | 9766066 | 14 | |
| Deletion | Chr1 | 10167463 | 10167484 | 21 | |
| Deletion | Chr10 | 10474672 | 10474680 | 8 | LOC_Os10g20700 |
| Deletion | Chr11 | 12712663 | 12712673 | 10 | |
| Deletion | Chr1 | 13403124 | 13403137 | 13 | |
| Deletion | Chr6 | 14105728 | 14105731 | 3 | LOC_Os06g24100 |
| Deletion | Chr5 | 16788121 | 16788125 | 4 | |
| Deletion | Chr12 | 17693864 | 17693875 | 11 | |
| Deletion | Chr4 | 21056412 | 21056413 | 1 | |
| Deletion | Chr10 | 22342933 | 22342937 | 4 | |
| Deletion | Chr5 | 28023346 | 28023353 | 7 | |
| Deletion | Chr3 | 28104639 | 28104643 | 4 | |
| Deletion | Chr2 | 31400123 | 31400124 | 1 | |
| Deletion | Chr4 | 34089975 | 34089976 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 25824153 | 25824154 | 2 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 3160269 | Chr4 | 33704598 | LOC_Os11g06570 |
| Translocation | Chr11 | 3161506 | Chr4 | 33704597 | LOC_Os11g06570 |