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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13655777	G-C	HOMO	INTERGENIC
SBS	Chr1	17833819	G-T	HOMO	INTERGENIC
SBS	Chr1	20335370	C-T	HOMO	INTERGENIC
SBS	Chr1	37735395	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g65000
SBS	Chr1	40421484	C-A	HET	INTERGENIC
SBS	Chr12	10271759	G-T	HOMO	INTERGENIC
SBS	Chr12	12642721	T-G	HOMO	INTRON
SBS	Chr12	26482482	A-G	HOMO	INTRON
SBS	Chr2	12169949	T-G	HOMO	INTRON
SBS	Chr2	34984688	G-A	HET	INTRON
SBS	Chr2	34984689	T-A	HET	INTRON
SBS	Chr3	14376926	A-T	HOMO	INTERGENIC
SBS	Chr3	20975446	C-T	HOMO	INTERGENIC
SBS	Chr3	35249024	A-T	HET	INTERGENIC
SBS	Chr3	35249025	C-T	HET	INTERGENIC
SBS	Chr4	19478056	C-T	HET	INTERGENIC
SBS	Chr4	23350689	G-C	HET	INTERGENIC
SBS	Chr4	28695580	C-T	HOMO	INTERGENIC
SBS	Chr4	35129238	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g59060
SBS	Chr5	19428879	A-G	HOMO	INTERGENIC
SBS	Chr5	337222	G-A	HET	INTERGENIC
SBS	Chr6	16196322	A-T	HOMO	INTERGENIC
SBS	Chr6	185206	A-G	HET	INTERGENIC
SBS	Chr7	17032419	G-A	HET	INTRON
SBS	Chr7	7102858	A-T	HET	INTERGENIC
SBS	Chr7	9360913	G-A	HET	INTRON
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr8	21272546	T-C	HET	INTERGENIC
SBS	Chr8	25838273	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g40830
SBS	Chr9	11930005	T-G	HET	INTERGENIC
SBS	Chr9	14529718	T-A	HET	INTERGENIC
SBS	Chr9	21285010	G-T	HET	INTERGENIC
SBS	Chr9	5495450	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	20624	20625	1
Deletion	Chr1	522132	522138	6
Deletion	Chr5	1453118	1453125	7
Deletion	Chr8	5190540	5190547	7
Deletion	Chr7	10561370	10561379	9
Deletion	Chr1	11708427	11708431	4
Deletion	Chr8	12903377	12903382	5
Deletion	Chr1	13370578	13370580	2
Deletion	Chr11	15708487	15708488	1
Deletion	Chr5	16604576	16604583	7
Deletion	Chr9	16983783	16983784	1	LOC_Os09g27950
Deletion	Chr8	17615128	17615138	10
Deletion	Chr3	18012357	18012358	1
Deletion	Chr4	19571799	19571800	1
Deletion	Chr3	23160200	23160201	1
Deletion	Chr6	23274534	23274541	7
Deletion	Chr1	24169805	24169806	1	LOC_Os01g42510
Deletion	Chr12	26482485	26482491	6
Deletion	Chr7	27123312	27123314	2	LOC_Os07g45460
Deletion	Chr2	32619596	32619601	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	23490639	23490640	2
Insertion	Chr6	12859888	12859888	1
Insertion	Chr6	3016076	3016076	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	23768571	Chr1	27457623	2
Translocation	Chr2	23768873	Chr1	27457631	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr11	6519809	6538181	18372	5

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