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Mutant Information

Mutant Name	FN-138 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-138 Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 10

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4698622	A-G	HET	INTRON
SBS	Chr10	11341426	A-C	HET	INTERGENIC
SBS	Chr10	20744448	C-T	HET	UTR_5_PRIME
SBS	Chr11	16104142	G-A	HET	INTERGENIC
SBS	Chr11	9807390	T-C	HET	INTRON
SBS	Chr12	8981092	C-G	HOMO	INTERGENIC
SBS	Chr2	7175709	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13430
SBS	Chr3	30424042	A-T	HET	SYNONYMOUS_CODING
SBS	Chr5	14085463	G-A	HOMO	INTERGENIC
SBS	Chr7	8169153	T-C	HOMO	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3784001	3815000	31000	3
Deletion	Chr10	11731001	11821000	90000	13
Deletion	Chr11	14375692	14375693	1
Deletion	Chr11	15628306	15628309	3
Deletion	Chr5	18387194	18387195	1
Deletion	Chr2	18566001	18581000	15000	3
Deletion	Chr1	20726137	20726142	5
Deletion	Chr2	22202467	22202471	4
Deletion	Chr12	24264752	24264759	7
Deletion	Chr4	25686033	25686034	1	LOC_Os04g43410
Deletion	Chr4	33430385	33430387	2
Deletion	Chr3	36126163	36126171	8	LOC_Os03g63940

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	25246934	25246935	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2577597	2745320	LOC_Os10g05540
Inversion	Chr8	8994737	8997330
Inversion	Chr2	18565429	18737015	LOC_Os02g31070
Inversion	Chr2	18579292	18737033	LOC_Os02g31080

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	269949	Chr2	19038033	2
Translocation	Chr8	273482	Chr2	19961809	LOC_Os08g01420
Translocation	Chr8	273552	Chr2	18863396	LOC_Os08g01420
Translocation	Chr8	396837	Chr2	19038025	2